Recent Publications

2023

1. Kesler, SR, Henneghan, AM, Prinsloo, S, Palesh, O, Wintermark, M. Neuroimaging based biotypes for precision diagnosis and prognosis in cancer-related cognitive impairment. Front Med (Lausanne). 2023;10 :1199605. doi: 10.3389/fmed.2023.1199605. PubMed PMID:37720513 PubMed Central PMC10499624.
2. Gronberg, MP, Jhingran, A, Netherton, TJ, Gay, SS, Cardenas, CE, Chung, C et al.. Deep learning-based dose prediction to improve the plan quality of volumetric modulated arc therapy for gynecologic cancers. Med Phys. 2023; :. doi: 10.1002/mp.16735. PubMed PMID:37706560 .
3. Lorenzo, G, Ahmed, SR, Ii, DAH, Vaughn, B, Kalpathy-Cramer, J, Solorio, L et al.. Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data. ArXiv. 2023; :. . PubMed PMID:37693182 PubMed Central PMC10491321.
4. Giolando, P, Kakaletsis, S, Zhang, X, Weickenmeier, J, Castillo, E, Dortdivanlioglu, B et al.. AI-dente: an open machine learning based tool to interpret nano-indentation data of soft tissues and materials. Soft Matter. 2023;19 (35):6710-6720. doi: 10.1039/d3sm00402c. PubMed PMID:37622379 PubMed Central PMC10499084.
5. Chen, Y, Pahlavian, SH, Jacobs, P, Neupane, T, Forghani-Arani, F, Castillo, E et al.. Systematic Evaluation of the Impact of Lung Segmentation Methods on 4-Dimensional Computed Tomography Ventilation Imaging Using a Large Patient Database. Int J Radiat Oncol Biol Phys. 2023; :. doi: 10.1016/j.ijrobp.2023.08.017. PubMed PMID:37607642 .
6. Ghassemi, N, Castillo, R, Castillo, E, Jones, BL, Miften, M, Kavanagh, B et al.. Evaluation of variables predicting PFT changes for lung cancer patients treated on a prospective 4DCT-ventilation functional avoidance clinical trial. Radiother Oncol. 2023;187 :109821. doi: 10.1016/j.radonc.2023.109821. PubMed PMID:37516361 PubMed Central PMC10529225.
7. Martinez, F, Castillo, E, Griffin, G, Chapman, S, Dey, M, Tholpady, A et al.. Technical Note: Use of a Novel Bacterial Culture Sampling Device for Pooled Whole Blood Platelets. Ann Clin Lab Sci. 2023;53 (3):485-488. . PubMed PMID:37437944 .
8. Franco-Rocha, OY, Lewis, KA, Longoria, KD, De La Torre Schutz, A, Wright, ML, Kesler, SR et al.. Cancer-related cognitive impairment in racial and ethnic minority groups: a scoping review. J Cancer Res Clin Oncol. 2023;149 (13):12561-12587. doi: 10.1007/s00432-023-05088-0. PubMed PMID:37432455 .
9. Thompson, EA, Jacobsen, MC, Fuentes, DT, Layman, RR, Cressman, ENK. Quantitative dual-energy computed tomography with cesium as a novel contrast agent for localization of thermochemical ablation in phantoms and ex vivo models. Med Phys. 2023; :. doi: 10.1002/mp.16558. PubMed PMID:37409792 .
10. Yang, J, Virostko, J, Liu, J, Jarrett, AM, Hormuth, DA 2nd, Yankeelov, TE et al.. Comparing mechanism-based and machine learning models for predicting the effects of glucose accessibility on tumor cell proliferation. Sci Rep. 2023;13 (1):10387. doi: 10.1038/s41598-023-37238-2. PubMed PMID:37369672 PubMed Central PMC10300192.
11. Davarci, OO, Yang, EY, Viguerie, A, Yankeelov, TE, Lorenzo, G. Dynamic parameterization of a modified SEIRD model to analyze and forecast the dynamics of COVID-19 outbreaks in the United States. Eng Comput. 2023; :1-25. doi: 10.1007/s00366-023-01816-9. PubMed PMID:37362241 PubMed Central PMC10129322.
12. Duswald, T, Lima, EABF, Oden, JT, Wohlmuth, B. Bridging Scales: a Hybrid Model to Simulate Vascular Tumor Growth and Treatment Response. ArXiv. 2023; :. . PubMed PMID:37332572 PubMed Central PMC10274951.
13. Franco-Rocha, OY, Wheldon, CW, Trainum, K, Kesler, SR, Henneghan, AM. Clinical, psychosocial, and sociodemographic factors of sexual and gender minority groups with cancer: A systematic review. Eur J Oncol Nurs. 2023;64 :102343. doi: 10.1016/j.ejon.2023.102343. PubMed PMID:37290162 .
14. Moore, SM, Quirk, JD, Lassiter, AW, Laforest, R, Ayers, GD, Badea, CT et al.. Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging. Tomography. 2023;9 (3):995-1009. doi: 10.3390/tomography9030081. PubMed PMID:37218941 PubMed Central PMC10204428.
15. Slavkova, KP, Patel, SH, Cacini, Z, Kazerouni, AS, Gardner, AL, Yankeelov, TE et al.. Author Correction: Mathematical modelling of the dynamics of image-informed tumor habitats in a murine model of glioma. Sci Rep. 2023;13 (1):8279. doi: 10.1038/s41598-023-35324-z. PubMed PMID:37217513 PubMed Central PMC10203110.
16. Mulholland, MM, Prinsloo, S, Kvale, E, Dula, AN, Palesh, O, Kesler, SR et al.. Behavioral and biologic characteristics of cancer-related cognitive impairment biotypes. Brain Imaging Behav. 2023;17 (3):320-328. doi: 10.1007/s11682-023-00774-6. PubMed PMID:37127832 PubMed Central PMC10195718.
17. Howland, KK, Brock, A. Cellular barcoding tracks heterogeneous clones through selective pressures and phenotypic transitions. Trends Cancer. 2023;9 (7):591-601. doi: 10.1016/j.trecan.2023.03.008. PubMed PMID:37105856 PubMed Central PMC10339273.
18. Alkim, E, Dowst, H, DiCarlo, J, Dobrolecki, LE, Hernández-Herrera, A, Hormuth, DA 2nd et al.. Toward Practical Integration of Omic and Imaging Data in Co-Clinical Trials. Tomography. 2023;9 (2):810-828. doi: 10.3390/tomography9020066. PubMed PMID:37104137 PubMed Central PMC10144684.
19. Gammon, ST, Cohen, AS, Lehnert, AL, Sullivan, DC, Malyarenko, D, Manning, HC et al.. An Online Repository for Pre-Clinical Imaging Protocols (PIPs). Tomography. 2023;9 (2):750-758. doi: 10.3390/tomography9020060. PubMed PMID:37104131 PubMed Central PMC10145184.
20. Adler, FR, Anderson, ARA, Bhushan, A, Bogdan, P, Bravo-Cordero, JJ, Brock, A et al.. Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Syst. 2023;14 (4):252-257. doi: 10.1016/j.cels.2023.03.002. PubMed PMID:37080161 .
21. Liang, B, Tan, J, Lozenski, L, Hormuth, DA, Yankeelov, TE, Villa, U et al.. Bayesian Inference of Tissue Heterogeneity for Individualized Prediction of Glioma Growth. IEEE Trans Med Imaging. 2023;42 (10):2865-2875. doi: 10.1109/TMI.2023.3267349. PubMed PMID:37058375 .
22. Franco-Rocha, OY, Wheldon, CW, Osier, N, Lett, E, Kesler, SR, Henneghan, AM et al.. Cisheteronormativity and its influence on the psychosocial experience of LGBTQ+ people with cancer: A qualitative systematic review. Psychooncology. 2023;32 (6):834-845. doi: 10.1002/pon.6133. PubMed PMID:37025048 .
23. Wright, JJ, Dulaney, A, Williams, JM, Hilmes, MA, Du, L, Kang, H et al.. Longitudinal MRI Shows Progressive Decline in Pancreas Size and Altered Pancreas Shape in Type 1 Diabetes. J Clin Endocrinol Metab. 2023;108 (10):2699-2707. doi: 10.1210/clinem/dgad150. PubMed PMID:36938587 PubMed Central PMC10505530.
24. Hernandez, S, Nguyen, C, Gay, S, Duryea, J, Howell, R, Fuentes, D et al.. Resection cavity auto-contouring for patients with pediatric medulloblastoma using only CT information. J Appl Clin Med Phys. 2023;24 (7):e13956. doi: 10.1002/acm2.13956. PubMed PMID:36917640 PubMed Central PMC10338760.
25. Brocklehurst, S, Ghousifam, N, Zuniga, K, Stolley, D, Rylander, MN. Multilayer In Vitro Human Skin Tissue Platforms for Quantitative Burn Injury Investigation. Bioengineering (Basel). 2023;10 (2):. doi: 10.3390/bioengineering10020265. PubMed PMID:36829759 PubMed Central PMC9952576.
26. Slavkova, KP, Patel, SH, Cacini, Z, Kazerouni, AS, Gardner, AL, Yankeelov, TE et al.. Mathematical modelling of the dynamics of image-informed tumor habitats in a murine model of glioma. Sci Rep. 2023;13 (1):2916. doi: 10.1038/s41598-023-30010-6. PubMed PMID:36804605 PubMed Central PMC9941120.
27. Burkey, AA, Ghousifam, N, Hillsley, AV, Brotherton, ZW, Rezaeeyazdi, M, Hatridge, TA et al.. Synthesis of Poly(allyl glycidyl ether)-Derived Polyampholytes and Their Application to the Cryopreservation of Living Cells. Biomacromolecules. 2023;24 (3):1475-1482. doi: 10.1021/acs.biomac.2c01488. PubMed PMID:36780271 .
28. Wright, JJ, Williams, JM, Letourneau-Freiberg, LR, Kandasamy, B, Reyes, D, Kanegusuku, AG et al.. Insulin Deficiency From Insulin Gene Mutation Leads to Smaller Pancreas. Diabetes Care. 2023;46 (4):773-776. doi: 10.2337/dc22-2082. PubMed PMID:36724370 PubMed Central PMC10090891.
29. Gronberg, MP, Beadle, BM, Garden, AS, Skinner, H, Gay, S, Netherton, T et al.. Deep Learning-Based Dose Prediction for Automated, Individualized Quality Assurance of Head and Neck Radiation Therapy Plans. Pract Radiat Oncol. 2023;13 (3):e282-e291. doi: 10.1016/j.prro.2022.12.003. PubMed PMID:36697347 .
30. Moawad, AW, Morshid, A, Khalaf, AM, Elmohr, MM, Hazle, JD, Fuentes, D et al.. Multimodality annotated hepatocellular carcinoma data set including pre- and post-TACE with imaging segmentation. Sci Data. 2023;10 (1):33. doi: 10.1038/s41597-023-01928-3. PubMed PMID:36653372 PubMed Central PMC9849450.
31. Phillips, CM, Lima, EABF, Gadde, M, Jarrett, AM, Rylander, MN, Yankeelov, TE et al.. Towards integration of time-resolved confocal microscopy of a 3D in vitro microfluidic platform with a hybrid multiscale model of tumor angiogenesis. PLoS Comput Biol. 2023;19 (1):e1009499. doi: 10.1371/journal.pcbi.1009499. PubMed PMID:36652468 PubMed Central PMC9886306.
32. Liu, J, Ii, DAH, Yang, J, Yankeelov, TE. A data assimilation framework to predict the response of glioma cells to radiation. Math Biosci Eng. 2023;20 (1):318-336. doi: 10.3934/mbe.2023015. PubMed PMID:36650768 .
33. Miller, R, Castillo, R, Castillo, E, Jones, BL, Miften, M, Kavanagh, B et al.. Characterizing Pulmonary Function Test Changes for Patients With Lung Cancer Treated on a 2-Institution, 4-Dimensional Computed Tomography-Ventilation Functional Avoidance Prospective Clinical Trial. Adv Radiat Oncol. 2023;8 (2):101133. doi: 10.1016/j.adro.2022.101133. PubMed PMID:36618762 PubMed Central PMC9816902.
34. Hernandez, S, Nguyen, C, Parkes, J, Burger, H, Rhee, DJ, Netherton, T et al.. Automating the treatment planning process for 3D-conformal pediatric craniospinal irradiation therapy. Pediatr Blood Cancer. 2023;70 (3):e30164. doi: 10.1002/pbc.30164. PubMed PMID:36591994 .
35. Cotner, M, Meng, S, Jost, T, Gardner, A, De Santiago, C, Brock, A et al.. Integration of quantitative methods and mathematical approaches for the modeling of cancer cell proliferation dynamics. Am J Physiol Cell Physiol. 2023;324 (2):C247-C262. doi: 10.1152/ajpcell.00185.2022. PubMed PMID:36503241 PubMed Central PMC9886359.
36. Slavkova, KP, DiCarlo, JC, Wadhwa, V, Kumar, S, Wu, C, Virostko, J et al.. An untrained deep learning method for reconstructing dynamic MR images from accelerated model-based data. Magn Reson Med. 2023;89 (4):1617-1633. doi: 10.1002/mrm.29547. PubMed PMID:36468624 PubMed Central PMC9892348.
37. Henneghan, AM, Kesler, SR. Subjective cancer-related cognitive impairments and salience network connectivity in breast cancer survivors. J Cancer Surviv. 2023;17 (4):967-973. doi: 10.1007/s11764-022-01307-8. PubMed PMID:36464750 PubMed Central PMC10239781.
38. Subramanian, S, Ghafouri, A, Scheufele, KM, Himthani, N, Davatzikos, C, Biros, G et al.. Ensemble Inversion for Brain Tumor Growth Models With Mass Effect. IEEE Trans Med Imaging. 2023;42 (4):982-995. doi: 10.1109/TMI.2022.3221913. PubMed PMID:36378796 PubMed Central PMC10201550.
39. Danesh, V, Arroliga, AC, Bourgeois, JA, Boehm, LM, McNeal, MJ, Widmer, AJ et al.. Symptom Clusters Seen in Adult COVID-19 Recovery Clinic Care Seekers. J Gen Intern Med. 2023;38 (2):442-449. doi: 10.1007/s11606-022-07908-4. PubMed PMID:36376627 PubMed Central PMC9663188.
40. DiCarlo, JC, Jarrett, AM, Kazerouni, AS, Virostko, J, Sorace, A, Slavkova, KP et al.. Analysis of simplicial complexes to determine when to sample for quantitative DCE MRI of the breast. Magn Reson Med. 2023;89 (3):1134-1150. doi: 10.1002/mrm.29511. PubMed PMID:36321574 PubMed Central PMC9792438.
41. Franco-Rocha, OY, Mahaffey, ML, Matsui, W, Kesler, SR. Remote assessment of cognitive dysfunction in hematologic malignancies using web-based neuropsychological testing. Cancer Med. 2023;12 (5):6068-6076. doi: 10.1002/cam4.5331. PubMed PMID:36221244 PubMed Central PMC10028155.

2022

1. Liu, J, Ii, DAH, Yang, J, Yankeelov, TE. A data assimilation framework to predict the response of glioma cells to radiation. Math Biosci Eng. 2023;20 (1):318-336. doi: 10.3934/mbe.2023015. PubMed PMID:36650768 .
2. Miller, R, Castillo, R, Castillo, E, Jones, BL, Miften, M, Kavanagh, B et al.. Characterizing Pulmonary Function Test Changes for Patients With Lung Cancer Treated on a 2-Institution, 4-Dimensional Computed Tomography-Ventilation Functional Avoidance Prospective Clinical Trial. Adv Radiat Oncol. 2023;8 (2):101133. doi: 10.1016/j.adro.2022.101133. PubMed PMID:36618762 PubMed Central PMC9816902.
3. Cotner, M, Meng, S, Jost, T, Gardner, A, De Santiago, C, Brock, A et al.. Integration of quantitative methods and mathematical approaches for the modeling of cancer cell proliferation dynamics. Am J Physiol Cell Physiol. 2023;324 (2):C247-C262. doi: 10.1152/ajpcell.00185.2022. PubMed PMID:36503241 PubMed Central PMC9886359.
4. Slavkova, KP, DiCarlo, JC, Wadhwa, V, Kumar, S, Wu, C, Virostko, J et al.. An untrained deep learning method for reconstructing dynamic MR images from accelerated model-based data. Magn Reson Med. 2023;89 (4):1617-1633. doi: 10.1002/mrm.29547. PubMed PMID:36468624 PubMed Central PMC9892348.
5. Henneghan, AM, Kesler, SR. Subjective cancer-related cognitive impairments and salience network connectivity in breast cancer survivors. J Cancer Surviv. 2023;17 (4):967-973. doi: 10.1007/s11764-022-01307-8. PubMed PMID:36464750 PubMed Central PMC10239781.
6. Lorenzo, G, di Muzio, N, Deantoni, CL, Cozzarini, C, Fodor, A, Briganti, A et al.. Patient-specific forecasting of postradiotherapy prostate-specific antigen kinetics enables early prediction of biochemical relapse. iScience. 2022;25 (11):105430. doi: 10.1016/j.isci.2022.105430. PubMed PMID:36388979 PubMed Central PMC9641236.
7. Danesh, V, Arroliga, AC, Bourgeois, JA, Boehm, LM, McNeal, MJ, Widmer, AJ et al.. Symptom Clusters Seen in Adult COVID-19 Recovery Clinic Care Seekers. J Gen Intern Med. 2023;38 (2):442-449. doi: 10.1007/s11606-022-07908-4. PubMed PMID:36376627 PubMed Central PMC9663188.
8. Xu, Q, Kaur, J, Wylie, D, Mittal, K, Li, H, Kolachina, R et al.. A Case Series Exploration of Multi-Regional Expression Heterogeneity in Triple-Negative Breast Cancer Patients. Int J Mol Sci. 2022;23 (21):. doi: 10.3390/ijms232113322. PubMed PMID:36362107 PubMed Central PMC9655720.
9. Resende, ACM, Lima, EABF, Almeida, RC, McKenna, MT, Yankeelov, TE. Model selection for assessing the effects of doxorubicin on triple-negative breast cancer cell lines. J Math Biol. 2022;85 (6-7):65. doi: 10.1007/s00285-022-01828-x. PubMed PMID:36352309 .
10. Kesler, SR, Harrison, RA, Rao, V, Dyson, H, Petersen, M, Prinsloo, S et al.. Predicting overall survival in diffuse glioma from the presurgical connectome. Sci Rep. 2022;12 (1):18783. doi: 10.1038/s41598-022-22387-7. PubMed PMID:36335224 PubMed Central PMC9637134.
11. DiCarlo, JC, Jarrett, AM, Kazerouni, AS, Virostko, J, Sorace, A, Slavkova, KP et al.. Analysis of simplicial complexes to determine when to sample for quantitative DCE MRI of the breast. Magn Reson Med. 2023;89 (3):1134-1150. doi: 10.1002/mrm.29511. PubMed PMID:36321574 PubMed Central PMC9792438.
12. Zuniga, K, Ghousifam, N, Sansalone, J, Senecal, K, Van Dyke, M, Rylander, MN et al.. Keratin Promotes Differentiation of Keratinocytes Seeded on Collagen/Keratin Hydrogels. Bioengineering (Basel). 2022;9 (10):. doi: 10.3390/bioengineering9100559. PubMed PMID:36290526 PubMed Central PMC9598618.
13. Anderson, EJ, Creech, CB, Berthaud, V, Piramzadian, A, Johnson, KA, Zervos, M et al.. Evaluation of mRNA-1273 Vaccine in Children 6 Months to 5 Years of Age. N Engl J Med. 2022;387 (18):1673-1687. doi: 10.1056/NEJMoa2209367. PubMed PMID:36260859 PubMed Central PMC9634866.
14. Franco-Rocha, OY, Mahaffey, ML, Matsui, W, Kesler, SR. Remote assessment of cognitive dysfunction in hematologic malignancies using web-based neuropsychological testing. Cancer Med. 2023;12 (5):6068-6076. doi: 10.1002/cam4.5331. PubMed PMID:36221244 PubMed Central PMC10028155.
15. Yang, EY, Howard, GR, Brock, A, Yankeelov, TE, Lorenzo, G. Mathematical characterization of population dynamics in breast cancer cells treated with doxorubicin. Front Mol Biosci. 2022;9 :972146. doi: 10.3389/fmolb.2022.972146. PubMed PMID:36172049 PubMed Central PMC9510895.
16. Himthani, N, Brunn, M, Kim, JY, Schulte, M, Mang, A, Biros, G et al.. CLAIRE-Parallelized Diffeomorphic Image Registration for Large-Scale Biomedical Imaging Applications. J Imaging. 2022;8 (9):. doi: 10.3390/jimaging8090251. PubMed PMID:36135416 PubMed Central PMC9501197.
17. Gates, EDH, Suki, D, Celaya, A, Weinberg, JS, Prabhu, SS, Sawaya, R et al.. Cellular Density in Adult Glioma, Estimated with MR Imaging Data and a Machine Learning Algorithm, Has Prognostic Power Approaching World Health Organization Histologic Grading in a Cohort of 1181 Patients. AJNR Am J Neuroradiol. 2022;43 (10):1411-1417. doi: 10.3174/ajnr.A7620. PubMed PMID:36109124 PubMed Central PMC9575543.
18. Brock, AK, Chamoun-Emanuelli, AM, Howard, EA, Huntzinger, KD, Lawhon, SD, Bryan, LK et al.. Wound swabs versus biopsies to detect methicillin resistant Staphylococcus aureus in experimental equine wounds. Vet Surg. 2022;51 (8):1196-1205. doi: 10.1111/vsu.13872. PubMed PMID:36102600 PubMed Central PMC9588683.
19. Bloom, MJ, Song, PN, Virostko, J, Yankeelov, TE, Sorace, AG. Quantifying the Effects of Combination Trastuzumab and Radiation Therapy in Human Epidermal Growth Factor Receptor 2-Positive Breast Cancer. Cancers (Basel). 2022;14 (17):. doi: 10.3390/cancers14174234. PubMed PMID:36077773 PubMed Central PMC9454606.
20. Abu-Shawareb, H, Acree, R, Adams, P, Adams, J, Addis, B, Aden, R et al.. Lawson Criterion for Ignition Exceeded in an Inertial Fusion Experiment. Phys Rev Lett. 2022;129 (7):075001. doi: 10.1103/PhysRevLett.129.075001. PubMed PMID:36018710 .
21. Fadel, LC, Patel, IV, Romero, J, Tan, IC, Kesler, SR, Rao, V et al.. A Mouse Holder for Awake Functional Imaging in Unanesthetized Mice: Applications in ³¹P Spectroscopy, Manganese-Enhanced Magnetic Resonance Imaging Studies, and Resting-State Functional Magnetic Resonance Imaging. Biosensors (Basel). 2022;12 (8):. doi: 10.3390/bios12080616. PubMed PMID:36005011 PubMed Central PMC9406174.
22. Silva, PS, Marcus, DM, Liu, D, Aiello, LP, Antoszyk, A, Elman, M et al.. Association of Ultra-Widefield Fluorescein Angiography-Identified Retinal Nonperfusion and the Risk of Diabetic Retinopathy Worsening Over Time. JAMA Ophthalmol. 2022;140 (10):936-945. doi: 10.1001/jamaophthalmol.2022.3130. PubMed PMID:35980610 PubMed Central PMC9389436.
23. Marcus, DM, Silva, PS, Liu, D, Aiello, LP, Antoszyk, A, Elman, M et al.. Association of Predominantly Peripheral Lesions on Ultra-Widefield Imaging and the Risk of Diabetic Retinopathy Worsening Over Time. JAMA Ophthalmol. 2022;140 (10):946-954. doi: 10.1001/jamaophthalmol.2022.3131. PubMed PMID:35980608 PubMed Central PMC9389433.
24. Wu, C, Jarrett, AM, Zhou, Z, Elshafeey, N, Adrada, BE, Candelaria, RP et al.. MRI-Based Digital Models Forecast Patient-Specific Treatment Responses to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer. Cancer Res. 2022;82 (18):3394-3404. doi: 10.1158/0008-5472.CAN-22-1329. PubMed PMID:35914239 PubMed Central PMC9481712.
25. Huang, K, Das, P, Olanrewaju, AM, Cardenas, C, Fuentes, D, Zhang, L et al.. Automation of radiation treatment planning for rectal cancer. J Appl Clin Med Phys. 2022;23 (9):e13712. doi: 10.1002/acm2.13712. PubMed PMID:35808871 PubMed Central PMC9512348.
26. Viguerie, A, Grave, M, Barros, GF, Lorenzo, G, Reali, A, Coutinho, ALGA et al.. Data-Driven Simulation of Fisher-Kolmogorov Tumor Growth Models Using Dynamic Mode Decomposition. J Biomech Eng. 2022;144 (12):. doi: 10.1115/1.4054925. PubMed PMID:35771166 .
27. Liu, X, Elbanan, MG, Luna, A, Haider, MA, Smith, AD, Sabottke, CF et al.. Radiomics in Abdominopelvic Solid-Organ Oncologic Imaging: Current Status. AJR Am J Roentgenol. 2022;219 (6):985-995. doi: 10.2214/AJR.22.27695. PubMed PMID:35766531 .
28. Secchi Del Rio, R, de Elguea-Lizarraga, JIO, Ceron, PM, Castillo, E, Pena, VG, Copado, DM et al.. Colonic splenic flexure resection with an end-to-end intracorporeal anastomosis using a circular stapler - A video vignette. Colorectal Dis. 2022;24 (11):1447-1449. doi: 10.1111/codi.16216. PubMed PMID:35674473 .
29. Hormuth, DA 2nd, Farhat, M, Christenson, C, Curl, B, Chad Quarles, C, Chung, C et al.. Opportunities for improving brain cancer treatment outcomes through imaging-based mathematical modeling of the delivery of radiotherapy and immunotherapy. Adv Drug Deliv Rev. 2022;187 :114367. doi: 10.1016/j.addr.2022.114367. PubMed PMID:35654212 .
30. Kesler, SR, Henneghan, AM, Thurman, W, Rao, V. Identifying Themes for Assessing Cancer-Related Cognitive Impairment: Topic Modeling and Qualitative Content Analysis of Public Online Comments. JMIR Cancer. 2022;8 (2):e34828. doi: 10.2196/34828. PubMed PMID:35612878 PubMed Central PMC9178450.
31. Schönfeld, S, Ozkan, A, Scarabosio, L, Rylander, MN, Kuttler, C. Environmental stress level to model tumor cell growth and survival. Math Biosci Eng. 2022;19 (6):5509-5545. doi: 10.3934/mbe.2022258. PubMed PMID:35603366 .
32. Wu, C, Lorenzo, G, Hormuth, DA 2nd, Lima, EABF, Slavkova, KP, DiCarlo, JC et al.. Integrating mechanism-based modeling with biomedical imaging to build practical digital twins for clinical oncology. Biophys Rev (Melville). 2022;3 (2):021304. doi: 10.1063/5.0086789. PubMed PMID:35602761 PubMed Central PMC9119003.
33. Matich, P, Bigelow, CL, Chambers, B, Dodds, JJ, Hebert, JA, Lemieux, A et al.. Delineation of blacktip shark (Carcharhinus limbatus) nursery habitats in the north-western Gulf of Mexico. J Fish Biol. 2022;101 (1):236-248. doi: 10.1111/jfb.15103. PubMed PMID:35591772 .
34. Creech, CB, Anderson, E, Berthaud, V, Yildirim, I, Atz, AM, Melendez Baez, I et al.. Evaluation of mRNA-1273 Covid-19 Vaccine in Children 6 to 11 Years of Age. N Engl J Med. 2022;386 (21):2011-2023. doi: 10.1056/NEJMoa2203315. PubMed PMID:35544369 PubMed Central PMC9127699.
35. Fritz, M, Köppl, T, Oden, JT, Wagner, A, Wohlmuth, B, Wu, C et al.. A 1D-0D-3D coupled model for simulating blood flow and transport processes in breast tissue. Int J Numer Method Biomed Eng. 2022;38 (7):e3612. doi: 10.1002/cnm.3612. PubMed PMID:35522186 .
36. Wu, C, Hormuth, DA, Lorenzo, G, Jarrett, AM, Pineda, F, Howard, FM et al.. Towards Patient-Specific Optimization of Neoadjuvant Treatment Protocols for Breast Cancer Based on Image-Guided Fluid Dynamics. IEEE Trans Biomed Eng. 2022;69 (11):3334-3344. doi: 10.1109/TBME.2022.3168402. PubMed PMID:35439121 PubMed Central PMC9640301.
37. Miller, R, Santangelo, T, Forghani-Arani, F, Rusthoven, C, Chen, Y, Castillo, E et al.. Changes in post-treatment cardiac PET avidity predict overall survival in lung cancer patients treated with chemoradiation: Secondary analysis of the ACRIN 6668/RTOG 0235 clinical trial. Radiother Oncol. 2022;171 :22-24. doi: 10.1016/j.radonc.2022.04.003. PubMed PMID:35413391 PubMed Central PMC9660739.
38. Kazerouni, AS, Hormuth, DA 2nd, Davis, T, Bloom, MJ, Mounho, S, Rahman, G et al.. Quantifying Tumor Heterogeneity via MRI Habitats to Characterize Microenvironmental Alterations in HER2+ Breast Cancer. Cancers (Basel). 2022;14 (7):. doi: 10.3390/cancers14071837. PubMed PMID:35406609 PubMed Central PMC8997932.
39. Howard, GR, Jost, TA, Yankeelov, TE, Brock, A. Quantification of long-term doxorubicin response dynamics in breast cancer cell lines to direct treatment schedules. PLoS Comput Biol. 2022;18 (3):e1009104. doi: 10.1371/journal.pcbi.1009104. PubMed PMID:35358172 PubMed Central PMC9004764.
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41. Danesh, V, Boehm, LM, Eaton, TL, Arroliga, AC, Mayer, KP, Kesler, SR et al.. Characteristics of Post-ICU and Post-COVID Recovery Clinics in 29 U.S. Health Systems. Crit Care Explor. 2022;4 (3):e0658. doi: 10.1097/CCE.0000000000000658. PubMed PMID:35291316 PubMed Central PMC8913088.
42. Henneghan, AM, Lewis, KA, Gill, E, Kesler, SR. Cognitive Impairment in Non-critical, Mild-to-Moderate COVID-19 Survivors. Front Psychol. 2022;13 :770459. doi: 10.3389/fpsyg.2022.770459. PubMed PMID:35250714 PubMed Central PMC8891805.
43. Liu, J, Hormuth, DA 2nd, Yang, J, Yankeelov, TE. A Multi-Compartment Model of Glioma Response to Fractionated Radiation Therapy Parameterized via Time-Resolved Microscopy Data. Front Oncol. 2022;12 :811415. doi: 10.3389/fonc.2022.811415. PubMed PMID:35186747 PubMed Central PMC8855115.
44. Akhter, F, Manrique-Bedoya, S, Moreau, C, Smith, AL, Feng, Y, Mayer, KM et al.. Characterization of thermal and optical properties in porcine pancreas tissue. Lasers Surg Med. 2022;54 (5):702-715. doi: 10.1002/lsm.23523. PubMed PMID:35170764 .
45. Gates, EDH, Celaya, A, Suki, D, Schellingerhout, D, Fuentes, D. An efficient magnetic resonance image data quality screening dashboard. J Appl Clin Med Phys. 2022;23 (4):e13557. doi: 10.1002/acm2.13557. PubMed PMID:35148034 PubMed Central PMC8992954.
46. Gardner, A, Morgan, D, Al'Khafaji, A, Brock, A. Functionalized Lineage Tracing for the Study and Manipulation of Heterogeneous Cell Populations. Methods Mol Biol. 2022;2394 :109-131. doi: 10.1007/978-1-0716-1811-0_8. PubMed PMID:35094325 .
47. Makker, V, Colombo, N, Casado Herráez, A, Santin, AD, Colomba, E, Miller, DS et al.. Lenvatinib plus Pembrolizumab for Advanced Endometrial Cancer. N Engl J Med. 2022;386 (5):437-448. doi: 10.1056/NEJMoa2108330. PubMed PMID:35045221 .
48. Moawad, AW, Fuentes, DT, ElBanan, MG, Shalaby, AS, Guccione, J, Kamel, S et al.. Artificial Intelligence in Diagnostic Radiology: Where Do We Stand, Challenges, and Opportunities. J Comput Assist Tomogr. ;46 (1):78-90. doi: 10.1097/RCT.0000000000001247. PubMed PMID:35027520 .
49. Chen, YI, Chang, YJ, Liao, SC, Nguyen, TD, Yang, J, Kuo, YA et al.. Generative adversarial network enables rapid and robust fluorescence lifetime image analysis in live cells. Commun Biol. 2022;5 (1):18. doi: 10.1038/s42003-021-02938-w. PubMed PMID:35017629 PubMed Central PMC8752789.
50. Roger, R, Hilmes, MA, Williams, JM, Moore, DJ, Powers, AC, Craddock, RC et al.. Deep learning-based pancreas volume assessment in individuals with type 1 diabetes. BMC Med Imaging. 2022;22 (1):5. doi: 10.1186/s12880-021-00729-7. PubMed PMID:34986790 PubMed Central PMC8734282.
51. Surov, A, Kim, JY, Aiello, M, Huang, W, Yankeelov, TE, Wienke, A et al.. Associations Between Dynamic Contrast Enhanced Magnetic Resonance Imaging and Clinically Relevant Histopathological Features in Breast Cancer: A Multicenter Analysis. In Vivo. 2022;36 (1):398-408. doi: 10.21873/invivo.12717. PubMed PMID:34972741 PubMed Central PMC8765187.
52. Becker, H, Stuifbergen, AK, Lim, S, Kesler, SR. Health Promotion, Functional Abilities, and Quality of Life Before and During COVID-19 in People With Multiple Sclerosis. Nurs Res. ;71 (2):84-89. doi: 10.1097/NNR.0000000000000573. PubMed PMID:34967826 .
53. Johnson, KE, Hoskote, AR, Rolin, DG, Kesler, SR. Correlates of mental health problems among students in Texas alternative high schools and school-level efforts to address mental health. Res Nurs Health. 2022;45 (2):183-193. doi: 10.1002/nur.22197. PubMed PMID:34822199 .
54. Henneghan, AM, Fico, BG, Wright, ML, Kesler, SR, Harrison, ML. Effects of meditation compared to music listening on biomarkers in breast cancer survivors with cognitive complaints: secondary outcomes of a pilot randomized control trial. Explore (NY). 2022;18 (6):657-662. doi: 10.1016/j.explore.2021.10.011. PubMed PMID:34802955 PubMed Central PMC9085959.
55. Holland, MD, Morales, A, Simmons, S, Smith, B, Misko, SR, Jiang, X et al.. Disposable point-of-care portable perfusion phantom for quantitative DCE-MRI. Med Phys. 2022;49 (1):271-281. doi: 10.1002/mp.15372. PubMed PMID:34802148 PubMed Central PMC9188826.
56. McGarry, SD, Brehler, M, Bukowy, JD, Lowman, AK, Bobholz, SA, Duenweg, SR et al.. Multi-Site Concordance of Diffusion-Weighted Imaging Quantification for Assessing Prostate Cancer Aggressiveness. J Magn Reson Imaging. 2022;55 (6):1745-1758. doi: 10.1002/jmri.27983. PubMed PMID:34767682 PubMed Central PMC9095769.
57. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Correction to: Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):156. doi: 10.1007/s11307-021-01676-z. PubMed PMID:34729660 .
58. Papadopoulos, C, Kolokithas-Ntoukas, A, Moreno, R, Fuentes, D, Loudos, G, Loukopoulos, VC et al.. Using kinetic Monte Carlo simulations to design efficient magnetic nanoparticles for clinical hyperthermia. Med Phys. 2022;49 (1):547-567. doi: 10.1002/mp.15317. PubMed PMID:34724215 .
59. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):144-155. doi: 10.1007/s11307-021-01639-4. PubMed PMID:34611767 PubMed Central PMC9302925.
60. Phillips, NS, Rao, V, Kmetz, L, Vela, R, Medick, S, Krull, K et al.. Changes in Brain Functional and Effective Connectivity After Treatment for Breast Cancer and Implications for Intervention Targets. Brain Connect. 2022;12 (4):385-397. doi: 10.1089/brain.2021.0049. PubMed PMID:34210168 PubMed Central PMC9131353.

2021

1. Akhter, F, Manrique-Bedoya, S, Moreau, C, Smith, AL, Feng, Y, Mayer, KM et al.. Assessment and Modeling of Plasmonic Photothermal Therapy Delivered via a Fiberoptic Microneedle Device Ex Vivo. Pharmaceutics. 2021;13 (12):. doi: 10.3390/pharmaceutics13122133. PubMed PMID:34959414 PubMed Central PMC8703536.
2. Gutierrez, C, Al'Khafaji, AM, Brenner, E, Johnson, KE, Gohil, SH, Lin, Z et al.. Multifunctional barcoding with ClonMapper enables high-resolution study of clonal dynamics during tumor evolution and treatment. Nat Cancer. 2021;2 (7):758-772. doi: 10.1038/s43018-021-00222-8. PubMed PMID:34939038 PubMed Central PMC8691751.
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4. Lima, EABF, Faghihi, D, Philley, R, Yang, J, Virostko, J, Phillips, CM et al.. Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth. PLoS Comput Biol. 2021;17 (11):e1008845. doi: 10.1371/journal.pcbi.1008845. PubMed PMID:34843457 PubMed Central PMC8659698.
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6. Johnson, KE, Hoskote, AR, Rolin, DG, Kesler, SR. Correlates of mental health problems among students in Texas alternative high schools and school-level efforts to address mental health. Res Nurs Health. 2022;45 (2):183-193. doi: 10.1002/nur.22197. PubMed PMID:34822199 .
7. Henneghan, AM, Fico, BG, Wright, ML, Kesler, SR, Harrison, ML. Effects of meditation compared to music listening on biomarkers in breast cancer survivors with cognitive complaints: secondary outcomes of a pilot randomized control trial. Explore (NY). 2022;18 (6):657-662. doi: 10.1016/j.explore.2021.10.011. PubMed PMID:34802955 PubMed Central PMC9085959.
8. Holland, MD, Morales, A, Simmons, S, Smith, B, Misko, SR, Jiang, X et al.. Disposable point-of-care portable perfusion phantom for quantitative DCE-MRI. Med Phys. 2022;49 (1):271-281. doi: 10.1002/mp.15372. PubMed PMID:34802148 PubMed Central PMC9188826.
9. Kesler, SR, Tang, T, Henneghan, AM, Wright, M, Gaber, MW, Palesh, O et al.. Cross-Sectional Characterization of Local Brain Network Connectivity Pre and Post Breast Cancer Treatment and Distinct Association With Subjective Cognitive and Psychological Function. Front Neurol. 2021;12 :746493. doi: 10.3389/fneur.2021.746493. PubMed PMID:34777216 PubMed Central PMC8586413.
10. McGarry, SD, Brehler, M, Bukowy, JD, Lowman, AK, Bobholz, SA, Duenweg, SR et al.. Multi-Site Concordance of Diffusion-Weighted Imaging Quantification for Assessing Prostate Cancer Aggressiveness. J Magn Reson Imaging. 2022;55 (6):1745-1758. doi: 10.1002/jmri.27983. PubMed PMID:34767682 PubMed Central PMC9095769.
11. Papadopoulos, C, Kolokithas-Ntoukas, A, Moreno, R, Fuentes, D, Loudos, G, Loukopoulos, VC et al.. Using kinetic Monte Carlo simulations to design efficient magnetic nanoparticles for clinical hyperthermia. Med Phys. 2022;49 (1):547-567. doi: 10.1002/mp.15317. PubMed PMID:34724215 .
12. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):144-155. doi: 10.1007/s11307-021-01639-4. PubMed PMID:34611767 PubMed Central PMC9302925.
13. Loyola, S, Huaman, A, Popuche, D, Castillo, E, Ampuero, JS, Silva, M et al.. Evaluation of Two Serological Assays for Diagnosing Zika Virus Infection. Diagnostics (Basel). 2021;11 (9):. doi: 10.3390/diagnostics11091696. PubMed PMID:34574037 PubMed Central PMC8469165.
14. Nair, GB, Al-Katib, S, Podolsky, R, Quinn, T, Stevens, C, Castillo, E et al.. Dynamic lung compliance imaging from 4DCT-derived volume change estimation. Phys Med Biol. 2021;66 (21):. doi: 10.1088/1361-6560/ac29ce. PubMed PMID:34560677 .
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16. Pati, S, Sharma, V, Aslam, H, Thakur, SP, Akbari, H, Mang, A et al.. Estimating Glioblastoma Biophysical Growth Parameters Using Deep Learning Regression. Brainlesion. 2021;12658 :157-167. doi: 10.1007/978-3-030-72084-1_15. PubMed PMID:34514469 PubMed Central PMC8428542.
17. Henneghan, AM, Lewis, KA, Gill, E, Franco-Rocha, OY, Vela, RD, Medick, S et al.. Describing cognitive function and psychosocial outcomes of COVID-19 survivors: A cross-sectional analysis. J Am Assoc Nurse Pract. 2021; :. doi: 10.1097/JXX.0000000000000647. PubMed PMID:34469360 PubMed Central PMC8882196.
18. Virostko, J, Craddock, RC, Williams, JM, Triolo, TM, Hilmes, MA, Kang, H et al.. Development of a standardized MRI protocol for pancreas assessment in humans. PLoS One. 2021;16 (8):e0256029. doi: 10.1371/journal.pone.0256029. PubMed PMID:34428220 PubMed Central PMC8384163.
19. Kim, M, Hong, S, Yankeelov, TE, Yeh, HC, Liu, YL. Deep learning-based classification of breast cancer cells using transmembrane receptor dynamics. Bioinformatics. 2021;38 (1):243-249. doi: 10.1093/bioinformatics/btab581. PubMed PMID:34390568 PubMed Central PMC8696113.
20. Woldeamanuel, YW, Blayney, DW, Jo, B, Fisher, SE, Benedict, C, Oakley-Girvan, I et al.. Headache outcomes of a sleep behavioral intervention in breast cancer survivors: Secondary analysis of a randomized clinical trial. Cancer. 2021;127 (23):4492-4503. doi: 10.1002/cncr.33844. PubMed PMID:34357593 PubMed Central PMC8578351.
21. Wu, C, Hormuth, DA 2nd, Easley, T, Eijkhout, V, Pineda, F, Karczmar, GS et al.. An in silico validation framework for quantitative DCE-MRI techniques based on a dynamic digital phantom. Med Image Anal. 2021;73 :102186. doi: 10.1016/j.media.2021.102186. PubMed PMID:34329903 PubMed Central PMC8453106.
22. Özkan, A, Stolley, DL, Cressman, ENK, McMillin, M, DeMorrow, S, Yankeelov, TE et al.. Tumor Microenvironment Alters Chemoresistance of Hepatocellular Carcinoma Through CYP3A4 Metabolic Activity. Front Oncol. 2021;11 :662135. doi: 10.3389/fonc.2021.662135. PubMed PMID:34262860 PubMed Central PMC8273608.
23. Yang, J, Virostko, J, Hormuth, DA 2nd, Liu, J, Brock, A, Kowalski, J et al.. An experimental-mathematical approach to predict tumor cell growth as a function of glucose availability in breast cancer cell lines. PLoS One. 2021;16 (7):e0240765. doi: 10.1371/journal.pone.0240765. PubMed PMID:34255770 PubMed Central PMC8277046.
24. Phillips, NS, Rao, V, Kmetz, L, Vela, R, Medick, S, Krull, K et al.. Changes in Brain Functional and Effective Connectivity After Treatment for Breast Cancer and Implications for Intervention Targets. Brain Connect. 2022;12 (4):385-397. doi: 10.1089/brain.2021.0049. PubMed PMID:34210168 PubMed Central PMC9131353.
25. Hormuth, DA 2nd, Phillips, CM, Wu, C, Lima, EABF, Lorenzo, G, Jha, PK et al.. Biologically-Based Mathematical Modeling of Tumor Vasculature and Angiogenesis via Time-Resolved Imaging Data. Cancers (Basel). 2021;13 (12):. doi: 10.3390/cancers13123008. PubMed PMID:34208448 PubMed Central PMC8234316.
26. Slavkova, KP, DiCarlo, JC, Kazerouni, AS, Virostko, J, Sorace, AG, Patt, D et al.. Characterizing Errors in Pharmacokinetic Parameters from Analyzing Quantitative Abbreviated DCE-MRI Data in Breast Cancer. Tomography. 2021;7 (3):253-267. doi: 10.3390/tomography7030023. PubMed PMID:34201654 PubMed Central PMC8293327.
27. Omran, M, Belcher, EK, Mohile, NA, Kesler, SR, Janelsins, MC, Hohmann, AG et al.. Review of the Role of the Brain in Chemotherapy-Induced Peripheral Neuropathy. Front Mol Biosci. 2021;8 :693133. doi: 10.3389/fmolb.2021.693133. PubMed PMID:34179101 PubMed Central PMC8226121.
28. Harrison, RA, Sharafeldin, N, Rexer, JL, Streck, B, Petersen, M, Henneghan, AM et al.. Neurocognitive Impairment After Hematopoietic Stem Cell Transplant for Hematologic Malignancies: Phenotype and Mechanisms. Oncologist. 2021;26 (11):e2021-e2033. doi: 10.1002/onco.13867. PubMed PMID:34156729 PubMed Central PMC8571768.
29. Moawad, AW, Ahmed, A, Fuentes, DT, Hazle, JD, Habra, MA, Elsayes, KM et al.. Machine learning-based texture analysis for differentiation of radiologically indeterminate small adrenal tumors on adrenal protocol CT scans. Abdom Radiol (NY). 2021;46 (10):4853-4863. doi: 10.1007/s00261-021-03136-2. PubMed PMID:34085089 .
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31. Liu, J, Hormuth, DA, Davis, T, Yang, J, McKenna, MT, Jarrett, AM et al.. A time-resolved experimental-mathematical model for predicting the response of glioma cells to single-dose radiation therapy. Integr Biol (Camb). 2021;13 (7):167-183. doi: 10.1093/intbio/zyab010. PubMed PMID:34060613 PubMed Central PMC8271006.
32. Zuniga, K, Gadde, M, Scheftel, J, Senecal, K, Cressman, E, Van Dyke, M et al.. Collagen/kerateine multi-protein hydrogels as a thermally stable extracellular matrix for 3D in vitro models. Int J Hyperthermia. 2021;38 (1):830-845. doi: 10.1080/02656736.2021.1930202. PubMed PMID:34058945 PubMed Central PMC10523628.
33. Woodall, RT, Hormuth Ii, DA, Wu, C, Abdelmalik, MRA, Phillips, WT, Bao, A et al.. Patient specific, imaging-informed modeling of rhenium-186 nanoliposome delivery via convection-enhanced delivery in glioblastoma multiforme. Biomed Phys Eng Express. 2021;7 (4):. doi: 10.1088/2057-1976/ac02a6. PubMed PMID:34050041 PubMed Central PMC9332136.
34. Hormuth, DA 2nd, Jarrett, AM, Lorenzo, G, Lima, EABF, Wu, C, Chung, C et al.. Math, magnets, and medicine: enabling personalized oncology. Expert Rev Precis Med Drug Dev. 2021;6 (2):79-81. doi: 10.1080/23808993.2021.1878023. PubMed PMID:34027102 PubMed Central PMC8133535.
35. Hormuth, DA 2nd, Jarrett, AM, Davis, T, Yankeelov, TE. Towards an Image-Informed Mathematical Model of In Vivo Response to Fractionated Radiation Therapy. Cancers (Basel). 2021;13 (8):. doi: 10.3390/cancers13081765. PubMed PMID:33917080 PubMed Central PMC8067722.
36. Kesler, SR, Sleurs, C, McDonald, BC, Deprez, S, van der Plas, E, Nieman, BJ et al.. Brain Imaging in Pediatric Cancer Survivors: Correlates of Cognitive Impairment. J Clin Oncol. 2021;39 (16):1775-1785. doi: 10.1200/JCO.20.02315. PubMed PMID:33886371 PubMed Central PMC8260924.
37. Hormuth, DA 2nd, Al Feghali, KA, Elliott, AM, Yankeelov, TE, Chung, C. Image-based personalization of computational models for predicting response of high-grade glioma to chemoradiation. Sci Rep. 2021;11 (1):8520. doi: 10.1038/s41598-021-87887-4. PubMed PMID:33875739 PubMed Central PMC8055874.
38. Ma, J, Goodwani, S, Acton, PJ, Buggia-Prevot, V, Kesler, SR, Jamal, I et al.. Inhibition of dual leucine zipper kinase prevents chemotherapy-induced peripheral neuropathy and cognitive impairments. Pain. 2021;162 (10):2599-2612. doi: 10.1097/j.pain.0000000000002256. PubMed PMID:33872235 PubMed Central PMC8442742.
39. Liu, TW, Gammon, ST, Yang, P, Fuentes, D, Piwnica-Worms, D. Myeloid cell-derived HOCl is a paracrine effector that trans-inhibits IKK/NF-κB in melanoma cells and limits early tumor progression. Sci Signal. 2021;14 (677):. doi: 10.1126/scisignal.aax5971. PubMed PMID:33824181 .
40. Harrison, RA, Rao, V, Kesler, SR. The association of genetic polymorphisms with neuroconnectivity in breast cancer patients. Sci Rep. 2021;11 (1):6169. doi: 10.1038/s41598-021-85768-4. PubMed PMID:33731765 PubMed Central PMC7971072.
41. Kline, JA, Camargo, CA Jr, Courtney, DM, Kabrhel, C, Nordenholz, KE, Aufderheide, T et al.. Clinical prediction rule for SARS-CoV-2 infection from 116 U.S. emergency departments 2-22-2021. PLoS One. 2021;16 (3):e0248438. doi: 10.1371/journal.pone.0248438. PubMed PMID:33690722 PubMed Central PMC7946184.
42. Liu, TW, Gammon, ST, Fuentes, D, Piwnica-Worms, D. Multi-Modal Multi-Spectral Intravital Macroscopic Imaging of Signaling Dynamics in Real Time during Tumor-Immune Interactions. Cells. 2021;10 (3):. doi: 10.3390/cells10030489. PubMed PMID:33668735 PubMed Central PMC7996138.
43. Henneghan, AM, Van Dyk, K, Kaufmann, T, Harrison, R, Gibbons, C, Heijnen, C et al.. Measuring Self-Reported Cancer-Related Cognitive Impairment: Recommendations From the Cancer Neuroscience Initiative Working Group. J Natl Cancer Inst. 2021;113 (12):1625-1633. doi: 10.1093/jnci/djab027. PubMed PMID:33638633 PubMed Central PMC8849125.
44. Klionsky, DJ, Abdel-Aziz, AK, Abdelfatah, S, Abdellatif, M, Abdoli, A, Abel, S et al.. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)¹. Autophagy. 2021;17 (1):1-382. doi: 10.1080/15548627.2020.1797280. PubMed PMID:33634751 PubMed Central PMC7996087.
45. Whisenant, JG, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Moy, L et al.. Factors Affecting Image Quality and Lesion Evaluability in Breast Diffusion-weighted MRI: Observations from the ECOG-ACRIN Cancer Research Group Multisite Trial (A6702). J Breast Imaging. 2021;3 (1):44-56. doi: 10.1093/jbi/wbaa103. PubMed PMID:33543122 PubMed Central PMC7835633.
46. Virostko, J, Kuketz, G, Higgins, E, Wu, C, Sorace, AG, DiCarlo, JC et al.. The rate of breast fibroglandular enhancement during dynamic contrast-enhanced MRI reflects response to neoadjuvant therapy. Eur J Radiol. 2021;136 :109534. doi: 10.1016/j.ejrad.2021.109534. PubMed PMID:33454460 PubMed Central PMC7897312.
47. Brunn, M, Himthani, N, Biros, G, Mehl, M, Mang, A. CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures. J Open Source Softw. 2021;6 (61):. doi: 10.21105/joss.03038. PubMed PMID:35295546 PubMed Central PMC8923611.
48. Brunn, M, Himthani, N, Biros, G, Mehl, M, Mang, A. Fast GPU 3D diffeomorphic image registration. J Parallel Distrib Comput. 2021;149 :149-162. doi: 10.1016/j.jpdc.2020.11.006. PubMed PMID:33380769 PubMed Central PMC7769216.
49. Berard, D, Navarro, JD, Bascos, G, Harb, A, Feng, Y, De Lorenzo, R et al.. Novel expandable architected breathing tube for improving airway securement in emergency care. J Mech Behav Biomed Mater. 2021;114 :104211. doi: 10.1016/j.jmbbm.2020.104211. PubMed PMID:33285451 .
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51. McDonald, ES, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Whisenant, JG et al.. Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial. Radiology. 2021;298 (1):60-70. doi: 10.1148/radiol.2020202465. PubMed PMID:33201788 PubMed Central PMC7771995.
52. Scheufele, K, Subramanian, S, Biros, G. Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. IEEE Trans Med Imaging. 2021;40 (1):193-204. doi: 10.1109/TMI.2020.3024264. PubMed PMID:32931431 PubMed Central PMC8565678.
53. Viguerie, A, Lorenzo, G, Auricchio, F, Baroli, D, Hughes, TJR, Patton, A et al.. Simulating the spread of COVID-19 via a spatially-resolved susceptible-exposed-infected-recovered-deceased (SEIRD) model with heterogeneous diffusion. Appl Math Lett. 2021;111 :106617. doi: 10.1016/j.aml.2020.106617. PubMed PMID:32834475 PubMed Central PMC7361091.

2020

1. Subramanian, S, Scheufele, K, Himthani, N, Biros, G. Multiatlas Calibration of Biophysical Brain Tumor Growth Models with Mass Effect. Med Image Comput Comput Assist Interv. 2020;12262 :551-560. doi: 10.1007/978-3-030-59713-9_53. PubMed PMID:34704089 PubMed Central PMC8543732.
2. Manrique-Bedoya, S, Abdul-Moqueet, M, Lopez, P, Gray, T, Disiena, M, Locker, A et al.. Multiphysics Modeling of Plasmonic Photothermal Heating Effects in Gold Nanoparticles and Nanoparticle Arrays. J Phys Chem C Nanomater Interfaces. 2020;124 (31):17172-17182. doi: 10.1021/acs.jpcc.0c02443. PubMed PMID:34367407 PubMed Central PMC8341645.
3. Subramanian, S, Scheufele, K, Mehl, M, Biros, G. WHERE DID THE TUMOR START? AN INVERSE SOLVER WITH SPARSE LOCALIZATION FOR TUMOR GROWTH MODELS. Inverse Probl. 2020;36 (4):. doi: 10.1088/1361-6420/ab649c. PubMed PMID:33746330 PubMed Central PMC7971430.
4. Borges, C, Biros, G. A DOMAIN DECOMPOSITION PRECONDITIONING FOR AN INVERSE VOLUME SCATTERING PROBLEM. Inverse Probl. 2020;36 (3):. doi: 10.1088/1361-6420/ab6e78. PubMed PMID:33746329 PubMed Central PMC7971429.
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11. Song, PN, Mansur, A, Dugger, KJ, Davis, TR, Howard, G, Yankeelov, TE et al.. CD4 T-cell immune stimulation of HER2 + breast cancer cells alters response to trastuzumab in vitro. Cancer Cell Int. 2020;20 (1):544. doi: 10.1186/s12935-020-01625-w. PubMed PMID:33292267 PubMed Central PMC7654187.
12. Berard, D, Navarro, JD, Bascos, G, Harb, A, Feng, Y, De Lorenzo, R et al.. Novel expandable architected breathing tube for improving airway securement in emergency care. J Mech Behav Biomed Mater. 2021;114 :104211. doi: 10.1016/j.jmbbm.2020.104211. PubMed PMID:33285451 .
13. Gates, EDH, Weinberg, JS, Prabhu, SS, Lin, JS, Hamilton, J, Hazle, JD et al.. Estimating Local Cellular Density in Glioma Using MR Imaging Data. AJNR Am J Neuroradiol. 2021;42 (1):102-108. doi: 10.3174/ajnr.A6884. PubMed PMID:33243897 PubMed Central PMC7814791.
14. Jarrett, AM, Hormuth, DA, Adhikarla, V, Sahoo, P, Abler, D, Tumyan, L et al.. Towards integration of ⁶⁴Cu-DOTA-trastuzumab PET-CT and MRI with mathematical modeling to predict response to neoadjuvant therapy in HER2 + breast cancer. Sci Rep. 2020;10 (1):20518. doi: 10.1038/s41598-020-77397-0. PubMed PMID:33239688 PubMed Central PMC7688955.
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16. McDonald, ES, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Whisenant, JG et al.. Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial. Radiology. 2021;298 (1):60-70. doi: 10.1148/radiol.2020202465. PubMed PMID:33201788 PubMed Central PMC7771995.
17. Jarrett, AM, Hormuth, DA 2nd, Wu, C, Kazerouni, AS, Ekrut, DA, Virostko, J et al.. Evaluating patient-specific neoadjuvant regimens for breast cancer via a mathematical model constrained by quantitative magnetic resonance imaging data. Neoplasia. 2020;22 (12):820-830. doi: 10.1016/j.neo.2020.10.011. PubMed PMID:33197744 PubMed Central PMC7677708.
18. Brunn, M, Himthani, N, Biros, G, Mehl, M, Mang, A. Multi-Node Multi-GPU Diffeomorphic Image Registration for Large-Scale Imaging Problems. Int Conf High Perform Comput Netw Storage Anal. 2020;2020 :. doi: 10.1109/sc41405.2020.00042. PubMed PMID:35295823 PubMed Central PMC8923614.
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20. Scheufele, K, Subramanian, S, Mang, A, Biros, G, Mehl, M. IMAGE-DRIVEN BIOPHYSICAL TUMOR GROWTH MODEL CALIBRATION. SIAM J Sci Comput. 2020;42 (3):B549-B580. doi: 10.1137/19M1275280. PubMed PMID:33071533 PubMed Central PMC7561052.
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23. Scheufele, K, Subramanian, S, Biros, G. Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. IEEE Trans Med Imaging. 2021;40 (1):193-204. doi: 10.1109/TMI.2020.3024264. PubMed PMID:32931431 PubMed Central PMC8565678.
24. Muthusivarajan, R, Allen, WJ, Pehere, AD, Sokolov, KV, Fuentes, D. Role of alkylated residues in the tetrapeptide self-assembly-A molecular dynamics study. J Comput Chem. 2020;41 (31):2634-2640. doi: 10.1002/jcc.26419. PubMed PMID:32930440 PubMed Central PMC7983104.
25. Shoghi, KI, Badea, CT, Blocker, SJ, Chenevert, TL, Laforest, R, Lewis, MT et al.. Co-Clinical Imaging Resource Program (CIRP): Bridging the Translational Divide to Advance Precision Medicine. Tomography. 2020;6 (3):273-287. doi: 10.18383/j.tom.2020.00023. PubMed PMID:32879897 PubMed Central PMC7442091.
26. Viguerie, A, Veneziani, A, Lorenzo, G, Baroli, D, Aretz-Nellesen, N, Patton, A et al.. Diffusion-reaction compartmental models formulated in a continuum mechanics framework: application to COVID-19, mathematical analysis, and numerical study. Comput Mech. 2020;66 (5):1131-1152. doi: 10.1007/s00466-020-01888-0. PubMed PMID:32836602 PubMed Central PMC7426072.
27. Jha, PK, Cao, L, Oden, JT. Bayesian-based predictions of COVID-19 evolution in Texas using multispecies mixture-theoretic continuum models. Comput Mech. 2020;66 (5):1055-1068. doi: 10.1007/s00466-020-01889-z. PubMed PMID:32836598 PubMed Central PMC7394277.
28. Viguerie, A, Lorenzo, G, Auricchio, F, Baroli, D, Hughes, TJR, Patton, A et al.. Simulating the spread of COVID-19 via a spatially-resolved susceptible-exposed-infected-recovered-deceased (SEIRD) model with heterogeneous diffusion. Appl Math Lett. 2021;111 :106617. doi: 10.1016/j.aml.2020.106617. PubMed PMID:32834475 PubMed Central PMC7361091.
29. Bastos, DCA, Fuentes, DT, Traylor, J, Weinberg, J, Kumar, VA, Stafford, J et al.. The use of laser interstitial thermal therapy in the treatment of brain metastases: a literature review. Int J Hyperthermia. 2020;37 (2):53-60. doi: 10.1080/02656736.2020.1748238. PubMed PMID:32672122 .
30. Gadde, M, Phillips, C, Ghousifam, N, Sorace, AG, Wong, E, Krishnamurthy, S et al.. In vitro vascularized tumor platform for modeling tumor-vasculature interactions of inflammatory breast cancer. Biotechnol Bioeng. 2020;117 (11):3572-3590. doi: 10.1002/bit.27487. PubMed PMID:32648934 PubMed Central PMC7996100.
31. Syed, AK, Whisenant, JG, Barnes, SL, Sorace, AG, Yankeelov, TE. Multiparametric Analysis of Longitudinal Quantitative MRI data to Identify Distinct Tumor Habitats in Preclinical Models of Breast Cancer. Cancers (Basel). 2020;12 (6):. doi: 10.3390/cancers12061682. PubMed PMID:32599906 PubMed Central PMC7352623.
32. Bell, LC, Semmineh, N, An, H, Eldeniz, C, Wahl, R, Schmainda, KM et al.. Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge. Tomography. 2020;6 (2):203-208. doi: 10.18383/j.tom.2020.00012. PubMed PMID:32548297 PubMed Central PMC7289259.
33. Whisenant, JG, Williams, JM, Kang, H, Arlinghaus, LR, Abramson, RG, Abramson, VG et al.. Quantitative Comparison of Prone and Supine PERCIST Measurements in Breast Cancer. Tomography. 2020;6 (2):170-176. doi: 10.18383/j.tom.2020.00002. PubMed PMID:32548293 PubMed Central PMC7289244.
34. Bastos, DCA, Weinberg, J, Kumar, VA, Fuentes, DT, Stafford, J, Li, J et al.. Laser Interstitial Thermal Therapy in the treatment of brain metastases and radiation necrosis. Cancer Lett. 2020;489 :9-18. doi: 10.1016/j.canlet.2020.05.014. PubMed PMID:32504657 .
35. Mang, A, Bakas, S, Subramanian, S, Davatzikos, C, Biros, G. Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology. Annu Rev Biomed Eng. 2020;22 :309-341. doi: 10.1146/annurev-bioeng-062117-121105. PubMed PMID:32501772 PubMed Central PMC7520881.
36. Moawad, AW, Fuentes, D, Khalaf, AM, Blair, KJ, Szklaruk, J, Qayyum, A et al.. Feasibility of Automated Volumetric Assessment of Large Hepatocellular Carcinomas' Responses to Transarterial Chemoembolization. Front Oncol. 2020;10 :572. doi: 10.3389/fonc.2020.00572. PubMed PMID:32457831 PubMed Central PMC7221016.
37. Özkan, A, Stolley, D, Cressman, ENK, McMillin, M, DeMorrow, S, Yankeelov, TE et al.. The Influence of Chronic Liver Diseases on Hepatic Vasculature: A Liver-on-a-chip Review. Micromachines (Basel). 2020;11 (5):. doi: 10.3390/mi11050487. PubMed PMID:32397454 PubMed Central PMC7281532.
38. Faghihi, D, Feng, X, Lima, EABF, Oden, JT, Yankeelov, TE. A Coupled Mass Transport and Deformation Theory of Multi-constituent Tumor Growth. J Mech Phys Solids. 2020;139 :. doi: 10.1016/j.jmps.2020.103936. PubMed PMID:32394987 PubMed Central PMC7213200.
39. Actor, JA, Fuentes, DT, Rivière, B. Identification of Kernels in a Convolutional Neural Network: Connections Between Level Set Equation and Deep Learning for Image Segmentation. Proc SPIE Int Soc Opt Eng. 2020;11313 :. doi: 10.1117/12.2548871. PubMed PMID:32377028 PubMed Central PMC7202368.
40. Jarrett, AM, Faghihi, D, Ii, DAH, Lima, EABF, Virostko, J, Biros, G et al.. Optimal Control Theory for Personalized Therapeutic Regimens in Oncology: Background, History, Challenges, and Opportunities. J Clin Med. 2020;9 (5):. doi: 10.3390/jcm9051314. PubMed PMID:32370195 PubMed Central PMC7290915.
41. Bloom, MJ, Jarrett, AM, Triplett, TA, Syed, AK, Davis, T, Yankeelov, TE et al.. Anti-HER2 induced myeloid cell alterations correspond with increasing vascular maturation in a murine model of HER2+ breast cancer. BMC Cancer. 2020;20 (1):359. doi: 10.1186/s12885-020-06868-4. PubMed PMID:32345237 PubMed Central PMC7189470.
42. Fuentes, D, Fahrenholtz, SJ, Guo, C, MacLellan, CJ, Layman, RR, Rivière, B et al.. Mathematical modeling of mass and energy transport for thermoembolization. Int J Hyperthermia. 2020;37 (1):356-365. doi: 10.1080/02656736.2020.1749317. PubMed PMID:32308071 .
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44. Williams, JM, Hilmes, MA, Archer, B, Dulaney, A, Du, L, Kang, H et al.. Repeatability and Reproducibility of Pancreas Volume Measurements Using MRI. Sci Rep. 2020;10 (1):4767. doi: 10.1038/s41598-020-61759-9. PubMed PMID:32179809 PubMed Central PMC7076034.
45. Brenner, E, Tiwari, GR, Kapoor, M, Liu, Y, Brock, A, Mayfield, RD et al.. Single cell transcriptome profiling of the human alcohol-dependent brain. Hum Mol Genet. 2020;29 (7):1144-1153. doi: 10.1093/hmg/ddaa038. PubMed PMID:32142123 PubMed Central PMC7206851.
46. Ahmed, AA, Elmohr, MM, Fuentes, D, Habra, MA, Fisher, SB, Perrier, ND et al.. Radiomic mapping model for prediction of Ki-67 expression in adrenocortical carcinoma. Clin Radiol. 2020;75 (6):479.e17-479.e22. doi: 10.1016/j.crad.2020.01.012. PubMed PMID:32089260 .
47. Papadopoulos, C, Efthimiadou, EK, Pissas, M, Fuentes, D, Boukos, N, Psycharis, V et al.. Magnetic fluid hyperthermia simulations in evaluation of SAR calculation methods. Phys Med. 2020;71 :39-52. doi: 10.1016/j.ejmp.2020.02.011. PubMed PMID:32088564 .
48. Wu, C, Hormuth, DA, Oliver, TA, Pineda, F, Lorenzo, G, Karczmar, GS et al.. Patient-Specific Characterization of Breast Cancer Hemodynamics Using Image-Guided Computational Fluid Dynamics. IEEE Trans Med Imaging. 2020;39 (9):2760-2771. doi: 10.1109/TMI.2020.2975375. PubMed PMID:32086203 PubMed Central PMC7438313.
49. Chou, CK, Liu, YL, Chen, YI, Huang, PJ, Tsou, PH, Chen, CT et al.. Digital Receptor Occupancy Assay in Quantifying On- and Off-Target Binding Affinities of Therapeutic Antibodies. ACS Sens. 2020;5 (2):296-302. doi: 10.1021/acssensors.9b01736. PubMed PMID:32073836 PubMed Central PMC7093205.
50. Gates, EDH, Lin, JS, Weinberg, JS, Prabhu, SS, Hamilton, J, Hazle, JD et al.. Imaging-Based Algorithm for the Local Grading of Glioma. AJNR Am J Neuroradiol. 2020;41 (3):400-407. doi: 10.3174/ajnr.A6405. PubMed PMID:32029466 PubMed Central PMC7077885.
51. Hormuth, DA 2nd, Jarrett, AM, Yankeelov, TE. Forecasting tumor and vasculature response dynamics to radiation therapy via image based mathematical modeling. Radiat Oncol. 2020;15 (1):4. doi: 10.1186/s13014-019-1446-2. PubMed PMID:31898514 PubMed Central PMC6941255.
52. Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Reply to Appropriate considerations of "rural" in National Cancer Data Base analyses. Cancer. 2020;126 (7):1586-1587. doi: 10.1002/cncr.32650. PubMed PMID:31821541 PubMed Central PMC7069778.
53. Lele, TP, Brock, A, Peyton, SR. Emerging Concepts and Tools in Cell Mechanomemory. Ann Biomed Eng. 2020;48 (7):2103-2112. doi: 10.1007/s10439-019-02412-z. PubMed PMID:31745676 .
54. Bastos, DCA, Rao, G, Oliva, ICG, Loree, JM, Fuentes, DT, Stafford, RJ et al.. Predictors of Local Control of Brain Metastasis Treated With Laser Interstitial Thermal Therapy. Neurosurgery. 2020;87 (1):112-122. doi: 10.1093/neuros/nyz357. PubMed PMID:31539421 .

2019

1. Morshid, A, Elsayes, KM, Khalaf, AM, Elmohr, MM, Yu, J, Kaseb, AO et al.. A machine learning model to predict hepatocellular carcinoma response to transcatheter arterial chemoembolization. Radiol Artif Intell. 2019;1 (5):. doi: 10.1148/ryai.2019180021. PubMed PMID:31858078 PubMed Central PMC6920060.
2. Scheufele, K, Mang, A, Gholami, A, Davatzikos, C, Biros, G, Mehl, M et al.. Coupling brain-tumor biophysical models and diffeomorphic image registration. Comput Methods Appl Mech Eng. 2019;347 :533-567. doi: 10.1016/j.cma.2018.12.008. PubMed PMID:31857736 PubMed Central PMC6922029.
3. Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Reply to Appropriate considerations of "rural" in National Cancer Data Base analyses. Cancer. 2020;126 (7):1586-1587. doi: 10.1002/cncr.32650. PubMed PMID:31821541 PubMed Central PMC7069778.
4. Liu, YL, Horning, AM, Lieberman, B, Kim, M, Lin, CK, Hung, CN et al.. Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer. Cancers (Basel). 2019;11 (12):. doi: 10.3390/cancers11121910. PubMed PMID:31805710 PubMed Central PMC6966510.
5. Lele, TP, Brock, A, Peyton, SR. Emerging Concepts and Tools in Cell Mechanomemory. Ann Biomed Eng. 2020;48 (7):2103-2112. doi: 10.1007/s10439-019-02412-z. PubMed PMID:31745676 .
6. Khalaf, AM, Fuentes, D, Morshid, A, Kaseb, AO, Hassan, M, Hazle, JD et al.. Hepatocellular carcinoma response to transcatheter arterial chemoembolisation using automatically generated pre-therapeutic tumour volumes by a random forest-based segmentation protocol. Clin Radiol. 2019;74 (12):974.e13-974.e20. doi: 10.1016/j.crad.2019.07.023. PubMed PMID:31521326 .
7. Chen, YI, Chang, YJ, Nguyen, TD, Liu, C, Phillion, S, Kuo, YA et al.. Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method. J Am Chem Soc. 2019;141 (40):15747-15750. doi: 10.1021/jacs.9b08036. PubMed PMID:31509386 PubMed Central PMC7179573.
8. Jarrett, AM, Shah, A, Bloom, MJ, McKenna, MT, Hormuth, DA 2nd, Yankeelov, TE et al.. Experimentally-driven mathematical modeling to improve combination targeted and cytotoxic therapy for HER2+ breast cancer. Sci Rep. 2019;9 (1):12830. doi: 10.1038/s41598-019-49073-5. PubMed PMID:31492947 PubMed Central PMC6731321.
9. Thrower, SL, Kandala, SK, Fuentes, D, Stefan, W, Sowko, N, Huang, M et al.. A compressed sensing approach to immobilized nanoparticle localization for superparamagnetic relaxometry. Phys Med Biol. 2019;64 (19):194001. doi: 10.1088/1361-6560/ab3c06. PubMed PMID:31422952 .
10. Gates, EDH, Yang, J, Fukumura, K, Lin, JS, Weinberg, JS, Prabhu, SS et al.. Spatial Distance Correlates With Genetic Distance in Diffuse Glioma. Front Oncol. 2019;9 :676. doi: 10.3389/fonc.2019.00676. PubMed PMID:31417865 PubMed Central PMC6682615.
11. Lorenzo, G, Pérez-García, VM, Mariño, A, Pérez-Romasanta, LA, Reali, A, Gomez, H et al.. Mechanistic modelling of prostate-specific antigen dynamics shows potential for personalized prediction of radiation therapy outcome. J R Soc Interface. 2019;16 (157):20190195. doi: 10.1098/rsif.2019.0195. PubMed PMID:31409240 PubMed Central PMC6731509.
12. Johnson, KE, Howard, G, Mo, W, Strasser, MK, Lima, EABF, Huang, S et al.. Cancer cell population growth kinetics at low densities deviate from the exponential growth model and suggest an Allee effect. PLoS Biol. 2019;17 (8):e3000399. doi: 10.1371/journal.pbio.3000399. PubMed PMID:31381560 PubMed Central PMC6695196.
13. Traylor, JI, Bastos, DCA, Fuentes, D, Muir, M, Patel, R, Kumar, VA et al.. Dynamic Contrast-Enhanced MRI in Patients with Brain Metastases Undergoing Laser Interstitial Thermal Therapy: A Pilot Study. AJNR Am J Neuroradiol. 2019;40 (9):1451-1457. doi: 10.3174/ajnr.A6144. PubMed PMID:31371353 PubMed Central PMC7048461.
14. Elmohr, MM, Fuentes, D, Habra, MA, Bhosale, PR, Qayyum, AA, Gates, E et al.. Machine learning-based texture analysis for differentiation of large adrenal cortical tumours on CT. Clin Radiol. 2019;74 (10):818.e1-818.e7. doi: 10.1016/j.crad.2019.06.021. PubMed PMID:31362884 .
15. Kabacaoğlu, G, Biros, G. Machine learning acceleration of simulations of Stokesian suspensions. Phys Rev E. 2019;99 (6-1):063313. doi: 10.1103/PhysRevE.99.063313. PubMed PMID:31330700 .
16. Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Recent trends in the age at diagnosis of colorectal cancer in the US National Cancer Data Base, 2004-2015. Cancer. 2019;125 (21):3828-3835. doi: 10.1002/cncr.32347. PubMed PMID:31328273 PubMed Central PMC6788938.
17. McKenna, MT, Weis, JA, Quaranta, V, Yankeelov, TE. Leveraging Mathematical Modeling to Quantify Pharmacokinetic and Pharmacodynamic Pathways: Equivalent Dose Metric. Front Physiol. 2019;10 :616. doi: 10.3389/fphys.2019.00616. PubMed PMID:31178753 PubMed Central PMC6538812.
18. Chakraborty, S, Ozkan, A, Rylander, MN, Woodward, WA, Vlachos, P. Mixture theory modeling for characterizing solute transport in breast tumor tissues. J Biol Eng. 2019;13 :46. doi: 10.1186/s13036-019-0178-z. PubMed PMID:31160921 PubMed Central PMC6542036.
19. Subramanian, S, Gholami, A, Biros, G. Simulation of glioblastoma growth using a 3D multispecies tumor model with mass effect. J Math Biol. 2019;79 (3):941-967. doi: 10.1007/s00285-019-01383-y. PubMed PMID:31127329 PubMed Central PMC7564807.
20. Fuentes, D, Ahmed, K, Lin, JS, Abdel-Wahab, R, Kaseb, AO, Hassan, M et al.. Automated Volumetric Assessment of Hepatocellular Carcinoma Response to Sorafenib: A Pilot Study. J Comput Assist Tomogr. 2019;43 (3):499-506. doi: 10.1097/RCT.0000000000000866. PubMed PMID:31082956 .
21. Rockne, RC, Hawkins-Daarud, A, Swanson, KR, Sluka, JP, Glazier, JA, Macklin, P et al.. The 2019 mathematical oncology roadmap. Phys Biol. 2019;16 (4):041005. doi: 10.1088/1478-3975/ab1a09. PubMed PMID:30991381 PubMed Central PMC6655440.
22. Hormuth, DA 2nd, Jarrett, AM, Feng, X, Yankeelov, TE. Calibrating a Predictive Model of Tumor Growth and Angiogenesis with Quantitative MRI. Ann Biomed Eng. 2019;47 (7):1539-1551. doi: 10.1007/s10439-019-02262-9. PubMed PMID:30963385 PubMed Central PMC6544501.
23. Hormuth, DA 2nd, Sorace, AG, Virostko, J, Abramson, RG, Bhujwalla, ZM, Enriquez-Navas, P et al.. Translating preclinical MRI methods to clinical oncology. J Magn Reson Imaging. 2019;50 (5):1377-1392. doi: 10.1002/jmri.26731. PubMed PMID:30925001 PubMed Central PMC6766430.
24. Feng, X, Hormuth, DA 2nd, Yankeelov, TE. An adjoint-based method for a linear mechanically-coupled tumor model: Application to estimate the spatial variation of murine glioma growth based on diffusion weighted magnetic resonance imaging. Comput Mech. 2019;63 (2):159-180. doi: 10.1007/s00466-018-1589-2. PubMed PMID:30880856 PubMed Central PMC6415692.
25. Yankeelov, TE. The Quantitative Imaging Network: A Decade of Achievement. Tomography. 2019;5 (1):A8. doi: 10.18383/j.tom.2019.00999. PubMed PMID:30854462 PubMed Central PMC6403024.
26. Bell, LC, Semmineh, N, An, H, Eldeniz, C, Wahl, R, Schmainda, KM et al.. Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO). Tomography. 2019;5 (1):110-117. doi: 10.18383/j.tom.2018.00041. PubMed PMID:30854448 PubMed Central PMC6403027.
27. Huang, W, Chen, Y, Fedorov, A, Li, X, Jajamovich, GH, Malyarenko, DI et al.. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II. Tomography. 2019;5 (1):99-109. doi: 10.18383/j.tom.2018.00027. PubMed PMID:30854447 PubMed Central PMC6403046.
28. Virostko, J, Sorace, AG, Wu, C, Ekrut, D, Jarrett, AM, Upadhyaya, RM et al.. Magnetization Transfer MRI of Breast Cancer in the Community Setting: Reproducibility and Preliminary Results in Neoadjuvant Therapy. Tomography. 2019;5 (1):44-52. doi: 10.18383/j.tom.2018.00019. PubMed PMID:30854441 PubMed Central PMC6403021.
29. Liu, YL, Chou, CK, Kim, M, Vasisht, R, Kuo, YA, Ang, P et al.. Assessing metastatic potential of breast cancer cells based on EGFR dynamics. Sci Rep. 2019;9 (1):3395. doi: 10.1038/s41598-018-37625-0. PubMed PMID:30833579 PubMed Central PMC6399327.
30. Ma, KY, Schonnesen, AA, Brock, A, Van Den Berg, C, Eckhardt, SG, Liu, Z et al.. Single-cell RNA sequencing of lung adenocarcinoma reveals heterogeneity of immune response-related genes. JCI Insight. 2019;4 (4):. doi: 10.1172/jci.insight.121387. PubMed PMID:30821712 PubMed Central PMC6478414.
31. Hormuth, DA 2nd, Jarrett, AM, Lima, EABF, McKenna, MT, Fuentes, DT, Yankeelov, TE et al.. Mechanism-Based Modeling of Tumor Growth and Treatment Response Constrained by Multiparametric Imaging Data. JCO Clin Cancer Inform. 2019;3 :1-10. doi: 10.1200/CCI.18.00055. PubMed PMID:30807209 PubMed Central PMC6535803.
32. Walker, CM, Fuentes, D, Larson, PEZ, Kundra, V, Vigneron, DB, Bankson, JA et al.. Effects of excitation angle strategy on quantitative analysis of hyperpolarized pyruvate. Magn Reson Med. 2019;81 (6):3754-3762. doi: 10.1002/mrm.27687. PubMed PMID:30793791 PubMed Central PMC6435389.
33. Johnson, K, Gomez, A, Burton, J, White, D, Chakravarty, A, Schmid, A et al.. Directional inconsistency between Response Evaluation Criteria in Solid Tumors (RECIST) time to progression and response speed and depth. Eur J Cancer. 2019;109 :196-203. doi: 10.1016/j.ejca.2018.11.008. PubMed PMID:30738696 .
34. Gates, EDH, Lin, JS, Weinberg, JS, Hamilton, J, Prabhu, SS, Hazle, JD et al.. Guiding the first biopsy in glioma patients using estimated Ki-67 maps derived from MRI: conventional versus advanced imaging. Neuro Oncol. 2019;21 (4):527-536. doi: 10.1093/neuonc/noz004. PubMed PMID:30657997 PubMed Central PMC6422438.
35. Ozkan, A, Ghousifam, N, Hoopes, PJ, Yankeelov, TE, Rylander, MN. In vitro vascularized liver and tumor tissue microenvironments on a chip for dynamic determination of nanoparticle transport and toxicity. Biotechnol Bioeng. 2019;116 (5):1201-1219. doi: 10.1002/bit.26919. PubMed PMID:30636289 .
36. Beechar, VB, Prabhu, SS, Bastos, D, Weinberg, JS, Stafford, RJ, Fuentes, D et al.. Correction to: Volumetric response of progressing post-SRS lesions treated with laser interstitial thermal therapy. J Neurooncol. 2019;141 (2):475. doi: 10.1007/s11060-019-03093-3. PubMed PMID:30635762 .
37. Lorenzo, G, Hughes, TJR, Dominguez-Frojan, P, Reali, A, Gomez, H. Computer simulations suggest that prostate enlargement due to benign prostatic hyperplasia mechanically impedes prostate cancer growth. Proc Natl Acad Sci U S A. 2019;116 (4):1152-1161. doi: 10.1073/pnas.1815735116. PubMed PMID:30617074 PubMed Central PMC6347698.
38. Mang, A, Gholami, A, Davatzikos, C, Biros, G. CLAIRE: A DISTRIBUTED-MEMORY SOLVER FOR CONSTRAINED LARGE DEFORMATION DIFFEOMORPHIC IMAGE REGISTRATION. SIAM J Sci Comput. 2019;41 (5):C548-C584. doi: 10.1137/18m1207818. PubMed PMID:34650324 PubMed Central PMC8513530.
39. Virostko, J, Williams, J, Hilmes, M, Bowman, C, Wright, JJ, Du, L et al.. Pancreas Volume Declines During the First Year After Diagnosis of Type 1 Diabetes and Exhibits Altered Diffusion at Disease Onset. Diabetes Care. 2019;42 (2):248-257. doi: 10.2337/dc18-1507. PubMed PMID:30552135 PubMed Central PMC6341292.
40. Bloom, MJ, Saksena, SD, Swain, GP, Behar, MS, Yankeelov, TE, Sorace, AG et al.. The effects of IKK-beta inhibition on early NF-kappa-B activation and transcription of downstream genes. Cell Signal. 2019;55 :17-25. doi: 10.1016/j.cellsig.2018.12.004. PubMed PMID:30543861 PubMed Central PMC6348059.
41. Syed, AK, Woodall, R, Whisenant, JG, Yankeelov, TE, Sorace, AG. Characterizing Trastuzumab-Induced Alterations in Intratumoral Heterogeneity with Quantitative Imaging and Immunohistochemistry in HER2+ Breast Cancer. Neoplasia. 2019;21 (1):17-29. doi: 10.1016/j.neo.2018.10.008. PubMed PMID:30472501 PubMed Central PMC6260456.
42. Saunders, DC, Brissova, M, Phillips, N, Shrestha, S, Walker, JT, Aramandla, R et al.. Ectonucleoside Triphosphate Diphosphohydrolase-3 Antibody Targets Adult Human Pancreatic β Cells for In Vitro and In Vivo Analysis. Cell Metab. 2019;29 (3):745-754.e4. doi: 10.1016/j.cmet.2018.10.007. PubMed PMID:30449685 PubMed Central PMC6402969.
43. Wu, C, Pineda, F, Hormuth, DA 2nd, Karczmar, GS, Yankeelov, TE. Quantitative analysis of vascular properties derived from ultrafast DCE-MRI to discriminate malignant and benign breast tumors. Magn Reson Med. 2019;81 (3):2147-2160. doi: 10.1002/mrm.27529. PubMed PMID:30368906 PubMed Central PMC6347496.
44. Jarrett, AM, Bloom, MJ, Godfrey, W, Syed, AK, Ekrut, DA, Ehrlich, LI et al.. Mathematical modelling of trastuzumab-induced immune response in an in vivo murine model of HER2+ breast cancer. Math Med Biol. 2019;36 (3):381-410. doi: 10.1093/imammb/dqy014. PubMed PMID:30239754 PubMed Central PMC6737347.

2018

1. Feng, X, Hormuth, DA 2nd, Yankeelov, TE. An adjoint-based method for a linear mechanically-coupled tumor model: Application to estimate the spatial variation of murine glioma growth based on diffusion weighted magnetic resonance imaging. Comput Mech. 2019;63 (2):159-180. doi: 10.1007/s00466-018-1589-2. PubMed PMID:30880856 PubMed Central PMC6415692.
2. Virostko, J, Williams, J, Hilmes, M, Bowman, C, Wright, JJ, Du, L et al.. Pancreas Volume Declines During the First Year After Diagnosis of Type 1 Diabetes and Exhibits Altered Diffusion at Disease Onset. Diabetes Care. 2019;42 (2):248-257. doi: 10.2337/dc18-1507. PubMed PMID:30552135 PubMed Central PMC6341292.
3. Bloom, MJ, Saksena, SD, Swain, GP, Behar, MS, Yankeelov, TE, Sorace, AG et al.. The effects of IKK-beta inhibition on early NF-kappa-B activation and transcription of downstream genes. Cell Signal. 2019;55 :17-25. doi: 10.1016/j.cellsig.2018.12.004. PubMed PMID:30543861 PubMed Central PMC6348059.
4. Syed, AK, Woodall, R, Whisenant, JG, Yankeelov, TE, Sorace, AG. Characterizing Trastuzumab-Induced Alterations in Intratumoral Heterogeneity with Quantitative Imaging and Immunohistochemistry in HER2+ Breast Cancer. Neoplasia. 2019;21 (1):17-29. doi: 10.1016/j.neo.2018.10.008. PubMed PMID:30472501 PubMed Central PMC6260456.
5. King, K, Quarles, J, Ravi, V, Chowdhury, TI, Friday, D, Sisson, C et al.. The Impact of a Location-Sensing Electronic Health Record on Clinician Efficiency and Accuracy: A Pilot Simulation Study. Appl Clin Inform. 2018;9 (4):841-848. doi: 10.1055/s-0038-1675812. PubMed PMID:30463095 PubMed Central PMC6249134.
6. Saunders, DC, Brissova, M, Phillips, N, Shrestha, S, Walker, JT, Aramandla, R et al.. Ectonucleoside Triphosphate Diphosphohydrolase-3 Antibody Targets Adult Human Pancreatic β Cells for In Vitro and In Vivo Analysis. Cell Metab. 2019;29 (3):745-754.e4. doi: 10.1016/j.cmet.2018.10.007. PubMed PMID:30449685 PubMed Central PMC6402969.
7. Wu, C, Pineda, F, Hormuth, DA 2nd, Karczmar, GS, Yankeelov, TE. Quantitative analysis of vascular properties derived from ultrafast DCE-MRI to discriminate malignant and benign breast tumors. Magn Reson Med. 2019;81 (3):2147-2160. doi: 10.1002/mrm.27529. PubMed PMID:30368906 PubMed Central PMC6347496.
8. Fuentes, D, Muñoz, NM, Guo, C, Polak, U, Minhaj, AA, Allen, WJ et al.. A molecular dynamics approach towards evaluating osmotic and thermal stress in the extracellular environment. Int J Hyperthermia. 2018;35 (1):559-567. doi: 10.1080/02656736.2018.1512161. PubMed PMID:30303437 .
9. Owens, CA, Peterson, CB, Tang, C, Koay, EJ, Yu, W, Mackin, DS et al.. Lung tumor segmentation methods: Impact on the uncertainty of radiomics features for non-small cell lung cancer. PLoS One. 2018;13 (10):e0205003. doi: 10.1371/journal.pone.0205003. PubMed PMID:30286184 PubMed Central PMC6171919.
10. Lima, EABF, Ghousifam, N, Ozkan, A, Oden, JT, Shahmoradi, A, Rylander, MN et al.. Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data. Sci Rep. 2018;8 (1):14558. doi: 10.1038/s41598-018-32347-9. PubMed PMID:30266911 PubMed Central PMC6162291.
11. Jarrett, AM, Lima, EABF, Hormuth, DA 2nd, McKenna, MT, Feng, X, Ekrut, DA et al.. Mathematical models of tumor cell proliferation: A review of the literature. Expert Rev Anticancer Ther. 2018;18 (12):1271-1286. doi: 10.1080/14737140.2018.1527689. PubMed PMID:30252552 PubMed Central PMC6295418.
12. Joyce, MH, Lu, C, James, ER, Hegab, R, Allen, SC, Suggs, LJ et al.. Phenotypic Basis for Matrix Stiffness-Dependent Chemoresistance of Breast Cancer Cells to Doxorubicin. Front Oncol. 2018;8 :337. doi: 10.3389/fonc.2018.00337. PubMed PMID:30234012 PubMed Central PMC6134055.
13. Al'Khafaji, AM, Deatherage, D, Brock, A. Control of Lineage-Specific Gene Expression by Functionalized gRNA Barcodes. ACS Synth Biol. 2018;7 (10):2468-2474. doi: 10.1021/acssynbio.8b00105. PubMed PMID:30169961 PubMed Central PMC6661167.
14. Howard, GR, Johnson, KE, Rodriguez Ayala, A, Yankeelov, TE, Brock, A. A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer. Sci Rep. 2018;8 (1):12058. doi: 10.1038/s41598-018-30467-w. PubMed PMID:30104569 PubMed Central PMC6089904.
15. DeWitt, MR, Rylander, MN. Tunable Collagen Microfluidic Platform to Study Nanoparticle Transport in the Tumor Microenvironment. Methods Mol Biol. 2018;1831 :159-178. doi: 10.1007/978-1-4939-8661-3_12. PubMed PMID:30051431 .
16. Khalaf, AM, Fuentes, D, Morshid, AI, Burke, MR, Kaseb, AO, Hassan, M et al.. Role of Wnt/β-catenin signaling in hepatocellular carcinoma, pathogenesis, and clinical significance. J Hepatocell Carcinoma. 2018;5 :61-73. doi: 10.2147/JHC.S156701. PubMed PMID:29984212 PubMed Central PMC6027703.
17. Bobo, MF, Bao, S, Huo, Y, Yao, Y, Virostko, J, Plassard, AJ et al.. Fully Convolutional Neural Networks Improve Abdominal Organ Segmentation. Proc SPIE Int Soc Opt Eng. 2018;10574 :. doi: 10.1117/12.2293751. PubMed PMID:29887665 PubMed Central PMC5992909.
18. Jarrett, AM, Hormuth, DA, Barnes, SL, Feng, X, Huang, W, Yankeelov, TE et al.. Incorporating drug delivery into an imaging-driven, mechanics-coupled reaction diffusion model for predicting the response of breast cancer to neoadjuvant chemotherapy: theory and preliminary clinical results. Phys Med Biol. 2018;63 (10):105015. doi: 10.1088/1361-6560/aac040. PubMed PMID:29697054 PubMed Central PMC5985823.
19. McKenna, MT, Weis, JA, Brock, A, Quaranta, V, Yankeelov, TE. Precision Medicine with Imprecise Therapy: Computational Modeling for Chemotherapy in Breast Cancer. Transl Oncol. 2018;11 (3):732-742. doi: 10.1016/j.tranon.2018.03.009. PubMed PMID:29674173 PubMed Central PMC6056758.
20. Sorace, AG, Wu, C, Barnes, SL, Jarrett, AM, Avery, S, Patt, D et al.. Repeatability, reproducibility, and accuracy of quantitative mri of the breast in the community radiology setting. J Magn Reson Imaging. 2018; :. doi: 10.1002/jmri.26011. PubMed PMID:29570895 PubMed Central PMC6151298.
21. Joint Head and Neck Radiotherapy-MRI Development Cooperative. Erratum: Dynamic contrast-enhanced magnetic resonance imaging for head and neck cancers. Sci Data. 2018;5 :180041. doi: 10.1038/sdata.2018.41. PubMed PMID:29557974 PubMed Central PMC5859876.
22. Cassat, JE, Moore, JL, Wilson, KJ, Stark, Z, Prentice, BM, Van de Plas, R et al.. Integrated molecular imaging reveals tissue heterogeneity driving host-pathogen interactions. Sci Transl Med. 2018;10 (432):. doi: 10.1126/scitranslmed.aan6361. PubMed PMID:29540616 PubMed Central PMC6005374.
23. Joint Head and Neck Radiotherapy-MRI Development Cooperative. Publisher Correction: A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations. Sci Rep. 2018;8 (1):4422. doi: 10.1038/s41598-018-20639-z. PubMed PMID:29520065 PubMed Central PMC5843662.
24. McKenna, MT, Weis, JA, Quaranta, V, Yankeelov, TE. Variable Cell Line Pharmacokinetics Contribute to Non-Linear Treatment Response in Heterogeneous Cell Populations. Ann Biomed Eng. 2018;46 (6):899-911. doi: 10.1007/s10439-018-2001-2. PubMed PMID:29484528 PubMed Central PMC5935587.
25. Joint Head and Neck Radiotherapy-MRI Development Cooperative. Dynamic contrast-enhanced magnetic resonance imaging for head and neck cancers. Sci Data. 2018;5 :180008. doi: 10.1038/sdata.2018.8. PubMed PMID:29437167 PubMed Central PMC5810424.
26. Hormuth, DA 2nd, Weis, JA, Barnes, SL, Miga, MI, Quaranta, V, Yankeelov, TE et al.. Biophysical Modeling of In Vivo Glioma Response After Whole-Brain Radiation Therapy in a Murine Model of Brain Cancer. Int J Radiat Oncol Biol Phys. 2018;100 (5):1270-1279. doi: 10.1016/j.ijrobp.2017.12.004. PubMed PMID:29398129 PubMed Central PMC5934308.
27. Sorace, AG, Partridge, SC, Li, X, Virostko, J, Barnes, SL, Hippe, DS et al.. Distinguishing benign and malignant breast tumors: preliminary comparison of kinetic modeling approaches using multi-institutional dynamic contrast-enhanced MRI data from the International Breast MR Consortium 6883 trial. J Med Imaging (Bellingham). 2018;5 (1):011019. doi: 10.1117/1.JMI.5.1.011019. PubMed PMID:29392160 PubMed Central PMC5777541.
28. Rocha, HL, Almeida, RC, Lima, EABF, Resende, ACM, Oden, JT, Yankeelov, TE et al.. A HYBRID THREE-SCALE MODEL OF TUMOR GROWTH. Math Models Methods Appl Sci. 2018;28 (1):61-93. doi: 10.1142/S0218202518500021. PubMed PMID:29353950 PubMed Central PMC5773147.
29. Hormuth, DA 2nd, Eldridge, SL, Weis, JA, Miga, MI, Yankeelov, TE. Mechanically Coupled Reaction-Diffusion Model to Predict Glioma Growth: Methodological Details. Methods Mol Biol. 2018;1711 :225-241. doi: 10.1007/978-1-4939-7493-1_11. PubMed PMID:29344892 PubMed Central PMC6530463.
30. Mitchell, D, Fahrenholtz, S, MacLellan, C, Bastos, D, Rao, G, Prabhu, S et al.. A heterogeneous tissue model for treatment planning for magnetic resonance-guided laser interstitial thermal therapy. Int J Hyperthermia. 2018;34 (7):943-952. doi: 10.1080/02656736.2018.1429679. PubMed PMID:29343140 .
31. Kang, H, Hainline, A, Arlinghaus, LR, Elderidge, S, Li, X, Abramson, VG et al.. Combining multiparametric MRI with receptor information to optimize prediction of pathologic response to neoadjuvant therapy in breast cancer: preliminary results. J Med Imaging (Bellingham). 2018;5 (1):011015. doi: 10.1117/1.JMI.5.1.011015. PubMed PMID:29322067 PubMed Central PMC5747275.
32. Beechar, VB, Prabhu, SS, Bastos, D, Weinberg, JS, Stafford, RJ, Fuentes, D et al.. Volumetric response of progressing post-SRS lesions treated with laser interstitial thermal therapy. J Neurooncol. 2018;137 (1):57-65. doi: 10.1007/s11060-017-2694-3. PubMed PMID:29204838 PubMed Central PMC5823725.
33. Virostko, J, Hainline, A, Kang, H, Arlinghaus, LR, Abramson, RG, Barnes, SL et al.. Dynamic contrast-enhanced magnetic resonance imaging and diffusion-weighted magnetic resonance imaging for predicting the response of locally advanced breast cancer to neoadjuvant therapy: a meta-analysis. J Med Imaging (Bellingham). 2018;5 (1):011011. doi: 10.1117/1.JMI.5.1.011011. PubMed PMID:29201942 PubMed Central PMC5701084.
34. Malyarenko, D, Fedorov, A, Bell, L, Prah, M, Hectors, S, Arlinghaus, L et al.. Toward uniform implementation of parametric map Digital Imaging and Communication in Medicine standard in multisite quantitative diffusion imaging studies. J Med Imaging (Bellingham). 2018;5 (1):011006. doi: 10.1117/1.JMI.5.1.011006. PubMed PMID:29134189 PubMed Central PMC5658654.
35. Woodall, RT, Barnes, SL, Hormuth, DA 2nd, Sorace, AG, Quarles, CC, Yankeelov, TE et al.. The effects of intravoxel contrast agent diffusion on the analysis of DCE-MRI data in realistic tissue domains. Magn Reson Med. 2018;80 (1):330-340. doi: 10.1002/mrm.26995. PubMed PMID:29115690 PubMed Central PMC5876107.
36. Newitt, DC, Malyarenko, D, Chenevert, TL, Quarles, CC, Bell, L, Fedorov, A et al.. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018;5 (1):011003. doi: 10.1117/1.JMI.5.1.011003. PubMed PMID:29021993 PubMed Central PMC5633866.
37. Cardin, DB, Goff, LW, Chan, E, Whisenant, JG, Dan Ayers, G, Takebe, N et al.. Dual Src and EGFR inhibition in combination with gemcitabine in advanced pancreatic cancer: phase I results : A phase I clinical trial. Invest New Drugs. 2018;36 (3):442-450. doi: 10.1007/s10637-017-0519-z. PubMed PMID:28990119 PubMed Central PMC5891394.
38. Bane, O, Hectors, SJ, Wagner, M, Arlinghaus, LL, Aryal, MP, Cao, Y et al.. Accuracy, repeatability, and interplatform reproducibility of T₁ quantification methods used for DCE-MRI: Results from a multicenter phantom study. Magn Reson Med. 2018;79 (5):2564-2575. doi: 10.1002/mrm.26903. PubMed PMID:28913930 PubMed Central PMC5821553.
39. MacLellan, CJ, Fuentes, D, Prabhu, S, Rao, G, Weinberg, JS, Hazle, JD et al.. A methodology for thermal dose model parameter development using perioperative MRI. Int J Hyperthermia. 2018;34 (6):687-696. doi: 10.1080/02656736.2017.1363418. PubMed PMID:28830311 .
40. Melancon, MP, Appleton Figueira, T, Fuentes, DT, Tian, L, Qiao, Y, Gu, J et al.. Development of an Electroporation and Nanoparticle-based Therapeutic Platform for Bone Metastases. Radiology. 2018;286 (1):149-157. doi: 10.1148/radiol.2017161721. PubMed PMID:28825892 .
41. Fahrenholtz, SJ, Madankan, R, Danish, S, Hazle, JD, Stafford, RJ, Fuentes, D et al.. Theoretical model for laser ablation outcome predictions in brain: calibration and validation on clinical MR thermometry images. Int J Hyperthermia. 2018;34 (1):101-111. doi: 10.1080/02656736.2017.1319974. PubMed PMID:28540820 PubMed Central PMC6295207.

2017

1. Hormuth, DA 2nd, Weis, JA, Barnes, SL, Miga, MI, Quaranta, V, Yankeelov, TE et al.. Biophysical Modeling of In Vivo Glioma Response After Whole-Brain Radiation Therapy in a Murine Model of Brain Cancer. Int J Radiat Oncol Biol Phys. 2018;100 (5):1270-1279. doi: 10.1016/j.ijrobp.2017.12.004. PubMed PMID:29398129 PubMed Central PMC5934308.
2. Rocha, HL, Almeida, RC, Lima, EABF, Resende, ACM, Oden, JT, Yankeelov, TE et al.. A HYBRID THREE-SCALE MODEL OF TUMOR GROWTH. Math Models Methods Appl Sci. 2018;28 (1):61-93. doi: 10.1142/S0218202518500021. PubMed PMID:29353950 PubMed Central PMC5773147.
3. Kang, H, Hainline, A, Arlinghaus, LR, Elderidge, S, Li, X, Abramson, VG et al.. Combining multiparametric MRI with receptor information to optimize prediction of pathologic response to neoadjuvant therapy in breast cancer: preliminary results. J Med Imaging (Bellingham). 2018;5 (1):011015. doi: 10.1117/1.JMI.5.1.011015. PubMed PMID:29322067 PubMed Central PMC5747275.
4. Lima, EABF, Oden, JT, Wohlmuth, B, Shahmoradi, A, Hormuth, DA 2nd, Yankeelov, TE et al.. Selection and Validation of Predictive Models of Radiation Effects on Tumor Growth Based on Noninvasive Imaging Data. Comput Methods Appl Mech Eng. 2017;327 :277-305. doi: 10.1016/j.cma.2017.08.009. PubMed PMID:29269963 PubMed Central PMC5734134.
5. Mang, A, Biros, G. A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION. SIAM J Sci Comput. 2017;39 (6):B1064-B1101. doi: 10.1137/16M1070475. PubMed PMID:29255342 PubMed Central PMC5731678.
6. Beechar, VB, Prabhu, SS, Bastos, D, Weinberg, JS, Stafford, RJ, Fuentes, D et al.. Volumetric response of progressing post-SRS lesions treated with laser interstitial thermal therapy. J Neurooncol. 2018;137 (1):57-65. doi: 10.1007/s11060-017-2694-3. PubMed PMID:29204838 PubMed Central PMC5823725.
7. Virostko, J, Hainline, A, Kang, H, Arlinghaus, LR, Abramson, RG, Barnes, SL et al.. Dynamic contrast-enhanced magnetic resonance imaging and diffusion-weighted magnetic resonance imaging for predicting the response of locally advanced breast cancer to neoadjuvant therapy: a meta-analysis. J Med Imaging (Bellingham). 2018;5 (1):011011. doi: 10.1117/1.JMI.5.1.011011. PubMed PMID:29201942 PubMed Central PMC5701084.
8. Brock, A, Huang, S. Precision Oncology: Between Vaguely Right and Precisely Wrong. Cancer Res. 2017;77 (23):6473-6479. doi: 10.1158/0008-5472.CAN-17-0448. PubMed PMID:29162615 .
9. Rahman, MM, Feng, Y, Yankeelov, TE, Oden, JT. A fully coupled space-time multiscale modeling framework for predicting tumor growth. Comput Methods Appl Mech Eng. 2017;320 :261-286. doi: 10.1016/j.cma.2017.03.021. PubMed PMID:29158608 PubMed Central PMC5693401.
10. Malyarenko, D, Fedorov, A, Bell, L, Prah, M, Hectors, S, Arlinghaus, L et al.. Toward uniform implementation of parametric map Digital Imaging and Communication in Medicine standard in multisite quantitative diffusion imaging studies. J Med Imaging (Bellingham). 2018;5 (1):011006. doi: 10.1117/1.JMI.5.1.011006. PubMed PMID:29134189 PubMed Central PMC5658654.
11. Woodall, RT, Barnes, SL, Hormuth, DA 2nd, Sorace, AG, Quarles, CC, Yankeelov, TE et al.. The effects of intravoxel contrast agent diffusion on the analysis of DCE-MRI data in realistic tissue domains. Magn Reson Med. 2018;80 (1):330-340. doi: 10.1002/mrm.26995. PubMed PMID:29115690 PubMed Central PMC5876107.
12. Newitt, DC, Malyarenko, D, Chenevert, TL, Quarles, CC, Bell, L, Fedorov, A et al.. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018;5 (1):011003. doi: 10.1117/1.JMI.5.1.011003. PubMed PMID:29021993 PubMed Central PMC5633866.
13. Cardin, DB, Goff, LW, Chan, E, Whisenant, JG, Dan Ayers, G, Takebe, N et al.. Dual Src and EGFR inhibition in combination with gemcitabine in advanced pancreatic cancer: phase I results : A phase I clinical trial. Invest New Drugs. 2018;36 (3):442-450. doi: 10.1007/s10637-017-0519-z. PubMed PMID:28990119 PubMed Central PMC5891394.
14. Hu, Z, Li, Y, Van Nieuwenhuijze, A, Selden, HJ, Jarrett, AM, Sorace, AG et al.. CCR7 Modulates the Generation of Thymic Regulatory T Cells by Altering the Composition of the Thymic Dendritic Cell Compartment. Cell Rep. 2017;21 (1):168-180. doi: 10.1016/j.celrep.2017.09.016. PubMed PMID:28978470 PubMed Central PMC5639943.
15. Wang, D, Arlinghaus, LR, Yankeelov, TE, Yang, X, Smith, DS. Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast. Int J Biomed Imaging. 2017;2017 :7835749. doi: 10.1155/2017/7835749. PubMed PMID:28932236 PubMed Central PMC5592397.
16. Sorace, AG, Harvey, S, Syed, A, Yankeelov, TE. Imaging Considerations and Interprofessional Opportunities in the Care of Breast Cancer Patients in the Neoadjuvant Setting. Semin Oncol Nurs. 2017;33 (4):425-439. doi: 10.1016/j.soncn.2017.08.008. PubMed PMID:28927763 PubMed Central PMC5667646.
17. Barnes, SL, Sorace, AG, Whisenant, JG, McIntyre, JO, Kang, H, Yankeelov, TE et al.. DCE- and DW-MRI as early imaging biomarkers of treatment response in a preclinical model of triple negative breast cancer. NMR Biomed. 2017;30 (11):. doi: 10.1002/nbm.3799. PubMed PMID:28915312 .
18. Bane, O, Hectors, SJ, Wagner, M, Arlinghaus, LL, Aryal, MP, Cao, Y et al.. Accuracy, repeatability, and interplatform reproducibility of T₁ quantification methods used for DCE-MRI: Results from a multicenter phantom study. Magn Reson Med. 2018;79 (5):2564-2575. doi: 10.1002/mrm.26903. PubMed PMID:28913930 PubMed Central PMC5821553.
19. Sovizi, J, Mathieu, KB, Thrower, SL, Stefan, W, Hazle, JD, Fuentes, D et al.. Gaussian process classification of superparamagnetic relaxometry data: Phantom study. Artif Intell Med. 2017;82 :47-59. doi: 10.1016/j.artmed.2017.07.001. PubMed PMID:28911905 .
20. Joint Head and Neck Radiotherapy-MRI Development Cooperative. A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations. Sci Rep. 2017;7 (1):11185. doi: 10.1038/s41598-017-11554-w. PubMed PMID:28894197 PubMed Central PMC5593829.
21. MacLellan, CJ, Fuentes, D, Prabhu, S, Rao, G, Weinberg, JS, Hazle, JD et al.. A methodology for thermal dose model parameter development using perioperative MRI. Int J Hyperthermia. 2018;34 (6):687-696. doi: 10.1080/02656736.2017.1363418. PubMed PMID:28830311 .
22. Melancon, MP, Appleton Figueira, T, Fuentes, DT, Tian, L, Qiao, Y, Gu, J et al.. Development of an Electroporation and Nanoparticle-based Therapeutic Platform for Bone Metastases. Radiology. 2018;286 (1):149-157. doi: 10.1148/radiol.2017161721. PubMed PMID:28825892 .
23. Mitcham, T, Taghavi, H, Long, J, Wood, C, Fuentes, D, Stefan, W et al.. Photoacoustic-based sO₂ estimation through excised bovine prostate tissue with interstitial light delivery. Photoacoustics. 2017;7 :47-56. doi: 10.1016/j.pacs.2017.06.004. PubMed PMID:28794990 PubMed Central PMC5540703.
24. McKenna, MT, Weis, JA, Barnes, SL, Tyson, DR, Miga, MI, Quaranta, V et al.. A Predictive Mathematical Modeling Approach for the Study of Doxorubicin Treatment in Triple Negative Breast Cancer. Sci Rep. 2017;7 (1):5725. doi: 10.1038/s41598-017-05902-z. PubMed PMID:28720897 PubMed Central PMC5516013.
25. Fahrenholtz, SJ, Madankan, R, Danish, S, Hazle, JD, Stafford, RJ, Fuentes, D et al.. Theoretical model for laser ablation outcome predictions in brain: calibration and validation on clinical MR thermometry images. Int J Hyperthermia. 2018;34 (1):101-111. doi: 10.1080/02656736.2017.1319974. PubMed PMID:28540820 PubMed Central PMC6295207.
26. Clark, A, Bird, NK, Brock, A. Intraductal Delivery to the Rabbit Mammary Gland. J Vis Exp. 2017; (121):. doi: 10.3791/55209. PubMed PMID:28362409 PubMed Central PMC5408859.
27. Kabacaoğlu, G, Quaife, B, Biros, G. Quantification of mixing in vesicle suspensions using numerical simulations in two dimensions. Phys Fluids (1994). 2017;29 (2):021901. doi: 10.1063/1.4975154. PubMed PMID:28344432 PubMed Central PMC5321511.
28. Hormuth, DA 2nd, Weis, JA, Barnes, SL, Miga, MI, Rericha, EC, Quaranta, V et al.. A mechanically coupled reaction-diffusion model that incorporates intra-tumoural heterogeneity to predict in vivo glioma growth. J R Soc Interface. 2017;14 (128):. doi: 10.1098/rsif.2016.1010. PubMed PMID:28330985 PubMed Central PMC5378136.
29. Yung, JP, Fuentes, D, MacLellan, CJ, Maier, F, Liapis, Y, Hazle, JD et al.. Referenceless magnetic resonance temperature imaging using Gaussian process modeling. Med Phys. 2017;44 (7):3545-3555. doi: 10.1002/mp.12231. PubMed PMID:28317125 .
30. Lin, JS, Fuentes, DT, Chandler, A, Prabhu, SS, Weinberg, JS, Baladandayuthapani, V et al.. Performance Assessment for Brain MR Imaging Registration Methods. AJNR Am J Neuroradiol. 2017;38 (5):973-980. doi: 10.3174/ajnr.A5122. PubMed PMID:28279984 PubMed Central PMC7960398.
31. Weis, JA, Miga, MI, Yankeelov, TE. Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy. Comput Methods Appl Mech Eng. 2017;314 :494-512. doi: 10.1016/j.cma.2016.08.024. PubMed PMID:28042181 PubMed Central PMC5193147.
32. Madankan, R, Stefan, W, Fahrenholtz, SJ, MacLellan, CJ, Hazle, JD, Stafford, RJ et al.. Accelerated magnetic resonance thermometry in the presence of uncertainties. Phys Med Biol. 2017;62 (1):214-245. doi: 10.1088/1361-6560/62/1/214. PubMed PMID:27991449 .
33. O'Connor, JP, Aboagye, EO, Adams, JE, Aerts, HJ, Barrington, SF, Beer, AJ et al.. Imaging biomarker roadmap for cancer studies. Nat Rev Clin Oncol. 2017;14 (3):169-186. doi: 10.1038/nrclinonc.2016.162. PubMed PMID:27725679 PubMed Central PMC5378302.
34. Sorace, AG, Syed, AK, Barnes, SL, Quarles, CC, Sanchez, V, Kang, H et al.. Quantitative [¹⁸F]FMISO PET Imaging Shows Reduction of Hypoxia Following Trastuzumab in a Murine Model of HER2+ Breast Cancer. Mol Imaging Biol. 2017;19 (1):130-137. doi: 10.1007/s11307-016-0994-1. PubMed PMID:27506906 PubMed Central PMC5214951.

2016

1. Lima, EABF, Oden, JT, Hormuth, DA 2nd, Yankeelov, TE, Almeida, RC. Selection, calibration, and validation of models of tumor growth. Math Models Methods Appl Sci. 2016;26 (12):2341-2368. doi: 10.1142/S021820251650055X. PubMed PMID:28827890 PubMed Central PMC5560997.
2. Kurland, BF, Aggarwal, S, Yankeelov, TE, Gerstner, ER, Mountz, JM, Linden, HM et al.. Accrual Patterns for Clinical Studies Involving Quantitative Imaging: Results of an NCI Quantitative Imaging Network (QIN) Survey. Tomography. 2016;2 (4):276-282. doi: 10.18383/j.tom.2016.00169. PubMed PMID:28127586 PubMed Central PMC5260812.
3. Malyarenko, DI, Wilmes, LJ, Arlinghaus, LR, Jacobs, MA, Huang, W, Helmer, KG et al.. QIN DAWG Validation of Gradient Nonlinearity Bias Correction Workflow for Quantitative Diffusion-Weighted Imaging in Multicenter Trials. Tomography. 2016;2 (4):396-405. doi: 10.18383/j.tom.2016.00214. PubMed PMID:28105469 PubMed Central PMC5241082.
4. Arlinghaus, LR, Dortch, RD, Whisenant, JG, Kang, H, Abramson, RG, Yankeelov, TE et al.. Quantitative Magnetization Transfer Imaging of the Breast at 3.0 T: Reproducibility in Healthy Volunteers. Tomography. 2016;2 (4):260-266. doi: 10.18383/j.tom.2016.00142. PubMed PMID:28090588 PubMed Central PMC5228602.
5. Whisenant, JG, Dortch, RD, Grissom, W, Kang, H, Arlinghaus, LR, Yankeelov, TE et al.. Bloch-Siegert B₁-Mapping Improves Accuracy and Precision of Longitudinal Relaxation Measurements in the Breast at 3 T. Tomography. 2016;2 (4):250-259. doi: 10.18383/j.tom.2016.00133. PubMed PMID:28044146 PubMed Central PMC5201175.
6. Weis, JA, Miga, MI, Yankeelov, TE. Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy. Comput Methods Appl Mech Eng. 2017;314 :494-512. doi: 10.1016/j.cma.2016.08.024. PubMed PMID:28042181 PubMed Central PMC5193147.
7. Madankan, R, Stefan, W, Fahrenholtz, SJ, MacLellan, CJ, Hazle, JD, Stafford, RJ et al.. Accelerated magnetic resonance thermometry in the presence of uncertainties. Phys Med Biol. 2017;62 (1):214-245. doi: 10.1088/1361-6560/62/1/214. PubMed PMID:27991449 .
8. Williams, JM, Arlinghaus, LR, Rani, SD, Shone, MD, Abramson, VG, Pendyala, P et al.. Towards real-time topical detection and characterization of FDG dose infiltration prior to PET imaging. Eur J Nucl Med Mol Imaging. 2016;43 (13):2374-2380. doi: 10.1007/s00259-016-3477-3. PubMed PMID:27557845 PubMed Central PMC5096989.
9. O'Connor, JP, Aboagye, EO, Adams, JE, Aerts, HJ, Barrington, SF, Beer, AJ et al.. Imaging biomarker roadmap for cancer studies. Nat Rev Clin Oncol. 2017;14 (3):169-186. doi: 10.1038/nrclinonc.2016.162. PubMed PMID:27725679 PubMed Central PMC5378302.
10. Sharifi, F, Sooriyarachchi, AC, Altural, H, Montazami, R, Rylander, MN, Hashemi, N et al.. Fiber Based Approaches as Medicine Delivery Systems. ACS Biomater Sci Eng. 2016;2 (9):1411-1431. doi: 10.1021/acsbiomaterials.6b00281. PubMed PMID:33440580 .
11. Ma, C, Sastry, KS, Flore, M, Gehani, S, Al-Bozom, I, Feng, Y et al.. CrossLink: a novel method for cross-condition classification of cancer subtypes. BMC Genomics. 2016;17 Suppl 7 (Suppl 7):549. doi: 10.1186/s12864-016-2903-z. PubMed PMID:27556419 PubMed Central PMC5001207.
12. Yankeelov, TE, Miga, MI. Introduction to the Special Section on Clinical Applications of Multi-Scale Modeling. Ann Biomed Eng. 2016;44 (9):2589-90. doi: 10.1007/s10439-016-1702-7. PubMed PMID:27491887 PubMed Central PMC4984394.
13. Virostko, J, Hilmes, M, Eitel, K, Moore, DJ, Powers, AC. Use of the Electronic Medical Record to Assess Pancreas Size in Type 1 Diabetes. PLoS One. 2016;11 (7):e0158825. doi: 10.1371/journal.pone.0158825. PubMed PMID:27391588 PubMed Central PMC4938534.
14. Yankeelov, TE, An, G, Saut, O, Luebeck, EG, Popel, AS, Ribba, B et al.. Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success. Ann Biomed Eng. 2016;44 (9):2626-41. doi: 10.1007/s10439-016-1691-6. PubMed PMID:27384942 PubMed Central PMC4983505.
15. Tam, AL, Figueira, TA, Gagea, M, Ensor, JE, Dixon, K, McWatters, A et al.. Irreversible Electroporation in the Epidural Space of the Porcine Spine: Effects on Adjacent Structures. Radiology. 2016;281 (3):763-771. doi: 10.1148/radiol.2016152688. PubMed PMID:27266723 PubMed Central PMC5952366.
16. Huang, W, Chen, Y, Fedorov, A, Li, X, Jajamovich, GH, Malyarenko, DI et al.. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016;2 (1):56-66. doi: 10.18383/j.tom.2015.00184. PubMed PMID:27200418 PubMed Central PMC4869732.
17. Chan, E, Arlinghaus, LR, Cardin, DB, Goff, L, Berlin, JD, Parikh, A et al.. Phase I trial of vorinostat added to chemoradiation with capecitabine in pancreatic cancer. Radiother Oncol. 2016;119 (2):312-8. doi: 10.1016/j.radonc.2016.04.013. PubMed PMID:27106554 PubMed Central PMC4961249.
18. Akbari, H, Macyszyn, L, Da, X, Bilello, M, Wolf, RL, Martinez-Lage, M et al.. Imaging Surrogates of Infiltration Obtained Via Multiparametric Imaging Pattern Analysis Predict Subsequent Location of Recurrence of Glioblastoma. Neurosurgery. 2016;78 (4):572-80. doi: 10.1227/NEU.0000000000001202. PubMed PMID:26813856 PubMed Central PMC4853918.
19. Sorace, AG, Quarles, CC, Whisenant, JG, Hanker, AB, McIntyre, JO, Sanchez, VM et al.. Trastuzumab improves tumor perfusion and vascular delivery of cytotoxic therapy in a murine model of HER2+ breast cancer: preliminary results. Breast Cancer Res Treat. 2016;155 (2):273-84. doi: 10.1007/s10549-016-3680-8. PubMed PMID:26791520 PubMed Central PMC4833210.
20. Yankeelov, TE, Mankoff, DA, Schwartz, LH, Lieberman, FS, Buatti, JM, Mountz, JM et al.. Quantitative Imaging in Cancer Clinical Trials. Clin Cancer Res. 2016;22 (2):284-90. doi: 10.1158/1078-0432.CCR-14-3336. PubMed PMID:26773162 PubMed Central PMC4717912.
21. Mang, A, Biros, G. Constrained H¹-regularization schemes for diffeomorphic image registration. SIAM J Imaging Sci. 2016;9 (3):1154-1194. doi: 10.1137/15M1010919. PubMed PMID:29075361 PubMed Central PMC5654641.
22. Abramson, RG, Arlinghaus, LR, Dula, AN, Quarles, CC, Stokes, AM, Weis, JA et al.. MR Imaging Biomarkers in Oncology Clinical Trials. Magn Reson Imaging Clin N Am. 2016;24 (1):11-29. doi: 10.1016/j.mric.2015.08.002. PubMed PMID:26613873 PubMed Central PMC4667554.
23. Macyszyn, L, Akbari, H, Pisapia, JM, Da, X, Attiah, M, Pigrish, V et al.. Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques. Neuro Oncol. 2016;18 (3):417-25. doi: 10.1093/neuonc/nov127. PubMed PMID:26188015 PubMed Central PMC4767233.
24. Gholami, A, Mang, A, Biros, G. An inverse problem formulation for parameter estimation of a reaction-diffusion model of low grade gliomas. J Math Biol. 2016;72 (1-2):409-33. doi: 10.1007/s00285-015-0888-x. PubMed PMID:25963601 PubMed Central PMC4643433.
25. Malyarenko, DI, Newitt, D, J Wilmes, L, Tudorica, A, Helmer, KG, Arlinghaus, LR et al.. Demonstration of nonlinearity bias in the measurement of the apparent diffusion coefficient in multicenter trials. Magn Reson Med. 2016;75 (3):1312-23. doi: 10.1002/mrm.25754. PubMed PMID:25940607 PubMed Central PMC4630210.