Recent Publications

2022
  1. Viguerie, A, Grave, M, Barros, GF, Lorenzo, G, Reali, A, Coutinho, A et al.. Data-Driven Simulation of Fisher-Kolmogorov Tumor Growth Models Using Dynamic Mode Decomposition. J Biomech Eng. 2022; :. doi: 10.1115/1.4054925. PubMed PMID:35771166 .
  2. Liu, X, Elbanan, MG, Luna, A, Haider, MA, Smith, AD, Sabottke, CF et al.. Radiomics in Abdominopelvic Solid-Organ Oncologic Imaging: Current Status. AJR Am J Roentgenol. 2022; :. doi: 10.2214/AJR.22.27695. PubMed PMID:35766531 .
  3. Hormuth, DA 2nd, Farhat, M, Christenson, C, Curl, B, Chad Quarles, C, Chung, C et al.. Opportunities for improving brain cancer treatment outcomes through imaging-based mathematical modeling of the delivery of radiotherapy and immunotherapy. Adv Drug Deliv Rev. 2022;187 :114367. doi: 10.1016/j.addr.2022.114367. PubMed PMID:35654212 .
  4. Kesler, SR, Henneghan, AM, Thurman, W, Rao, V. Identifying Themes for Assessing Cancer-Related Cognitive Impairment: Topic Modeling and Qualitative Content Analysis of Public Online Comments. JMIR Cancer. 2022;8 (2):e34828. doi: 10.2196/34828. PubMed PMID:35612878 .
  5. Schönfeld, S, Ozkan, A, Scarabosio, L, Rylander, MN, Kuttler, C. Environmental stress level to model tumor cell growth and survival. Math Biosci Eng. 2022;19 (6):5509-5545. doi: 10.3934/mbe.2022258. PubMed PMID:35603366 .
  6. Wu, C, Lorenzo, G, Hormuth, DA 2nd, Lima, EABF, Slavkova, KP, DiCarlo, JC et al.. Integrating mechanism-based modeling with biomedical imaging to build practical digital twins for clinical oncology. Biophys Rev (Melville). 2022;3 (2):021304. doi: 10.1063/5.0086789. PubMed PMID:35602761 PubMed Central PMC9119003.
  7. Matich, P, Bigelow, CL, Chambers, B, Dodds, JJ, Hebert, JA, Lemieux, A et al.. Delineation of blacktip shark (Carcharhinus limbatus) nursery habitats in the north-western Gulf of Mexico. J Fish Biol. 2022; :. doi: 10.1111/jfb.15103. PubMed PMID:35591772 .
  8. Creech, CB, Anderson, E, Berthaud, V, Yildirim, I, Atz, AM, Melendez Baez, I et al.. Evaluation of mRNA-1273 Covid-19 Vaccine in Children 6 to 11 Years of Age. N Engl J Med. 2022;386 (21):2011-2023. doi: 10.1056/NEJMoa2203315. PubMed PMID:35544369 .
  9. Fritz, M, Köppl, T, Oden, JT, Wagner, A, Wohlmuth, B, Wu, C et al.. A 1D-0D-3D coupled model for simulating blood flow and transport processes in breast tissue. Int J Numer Method Biomed Eng. 2022; :e3612. doi: 10.1002/cnm.3612. PubMed PMID:35522186 .
  10. Wu, C, Hormuth, D, Lorenzo, G, Jarrett, A, Pineda, F, Howard, FM et al.. Towards patient-specific optimization of neoadjuvant treatment protocols for breast cancer based on image-guided fluid dynamics. IEEE Trans Biomed Eng. 2022;PP :. doi: 10.1109/TBME.2022.3168402. PubMed PMID:35439121 .
  11. Miller, R, Santangelo, T, Forghani-Arani, F, Rusthoven, C, Chen, Y, Castillo, E et al.. Changes in post-treatment cardiac PET avidity predict overall survival in lung cancer patients treated with chemoradiation: Secondary analysis of the ACRIN 6668/RTOG 0235 clinical trial. Radiother Oncol. 2022;171 :22-24. doi: 10.1016/j.radonc.2022.04.003. PubMed PMID:35413391 .
  12. Kazerouni, AS, Hormuth, DA 2nd, Davis, T, Bloom, MJ, Mounho, S, Rahman, G et al.. Quantifying Tumor Heterogeneity via MRI Habitats to Characterize Microenvironmental Alterations in HER2+ Breast Cancer. Cancers (Basel). 2022;14 (7):. doi: 10.3390/cancers14071837. PubMed PMID:35406609 PubMed Central PMC8997932.
  13. Howard, GR, Jost, TA, Yankeelov, TE, Brock, A. Quantification of long-term doxorubicin response dynamics in breast cancer cell lines to direct treatment schedules. PLoS Comput Biol. 2022;18 (3):e1009104. doi: 10.1371/journal.pcbi.1009104. PubMed PMID:35358172 PubMed Central PMC9004764.
  14. Ren, Z, Pineda, FD, Howard, FM, Hill, E, Szasz, T, Safi, R et al.. Differences Between Ipsilateral and Contralateral Early Parenchymal Enhancement Kinetics Predict Response of Breast Cancer to Neoadjuvant Therapy. Acad Radiol. 2022; :. doi: 10.1016/j.acra.2022.02.008. PubMed PMID:35351365 .
  15. Danesh, V, Boehm, LM, Eaton, TL, Arroliga, AC, Mayer, KP, Kesler, SR et al.. Characteristics of Post-ICU and Post-COVID Recovery Clinics in 29 U.S. Health Systems. Crit Care Explor. 2022;4 (3):e0658. doi: 10.1097/CCE.0000000000000658. PubMed PMID:35291316 PubMed Central PMC8913088.
  16. Henneghan, AM, Lewis, KA, Gill, E, Kesler, SR. Cognitive Impairment in Non-critical, Mild-to-Moderate COVID-19 Survivors. Front Psychol. 2022;13 :770459. doi: 10.3389/fpsyg.2022.770459. PubMed PMID:35250714 PubMed Central PMC8891805.
  17. Liu, J, Hormuth, DA 2nd, Yang, J, Yankeelov, TE. A Multi-Compartment Model of Glioma Response to Fractionated Radiation Therapy Parameterized via Time-Resolved Microscopy Data. Front Oncol. 2022;12 :811415. doi: 10.3389/fonc.2022.811415. PubMed PMID:35186747 PubMed Central PMC8855115.
  18. Akhter, F, Manrique-Bedoya, S, Moreau, C, Smith, AL, Feng, Y, Mayer, KM et al.. Characterization of thermal and optical properties in porcine pancreas tissue. Lasers Surg Med. 2022;54 (5):702-715. doi: 10.1002/lsm.23523. PubMed PMID:35170764 .
  19. Gates, EDH, Celaya, A, Suki, D, Schellingerhout, D, Fuentes, D. An efficient magnetic resonance image data quality screening dashboard. J Appl Clin Med Phys. 2022;23 (4):e13557. doi: 10.1002/acm2.13557. PubMed PMID:35148034 PubMed Central PMC8992954.
  20. Gardner, A, Morgan, D, Al'Khafaji, A, Brock, A. Functionalized Lineage Tracing for the Study and Manipulation of Heterogeneous Cell Populations. Methods Mol Biol. 2022;2394 :109-131. doi: 10.1007/978-1-0716-1811-0_8. PubMed PMID:35094325 .
  21. Makker, V, Colombo, N, Casado Herráez, A, Santin, AD, Colomba, E, Miller, DS et al.. Lenvatinib plus Pembrolizumab for Advanced Endometrial Cancer. N Engl J Med. 2022;386 (5):437-448. doi: 10.1056/NEJMoa2108330. PubMed PMID:35045221 .
  22. Moawad, AW, Fuentes, DT, ElBanan, MG, Shalaby, AS, Guccione, J, Kamel, S et al.. Artificial Intelligence in Diagnostic Radiology: Where Do We Stand, Challenges, and Opportunities. J Comput Assist Tomogr. ;46 (1):78-90. doi: 10.1097/RCT.0000000000001247. PubMed PMID:35027520 .
  23. Chen, YI, Chang, YJ, Liao, SC, Nguyen, TD, Yang, J, Kuo, YA et al.. Generative adversarial network enables rapid and robust fluorescence lifetime image analysis in live cells. Commun Biol. 2022;5 (1):18. doi: 10.1038/s42003-021-02938-w. PubMed PMID:35017629 PubMed Central PMC8752789.
  24. Roger, R, Hilmes, MA, Williams, JM, Moore, DJ, Powers, AC, Craddock, RC et al.. Deep learning-based pancreas volume assessment in individuals with type 1 diabetes. BMC Med Imaging. 2022;22 (1):5. doi: 10.1186/s12880-021-00729-7. PubMed PMID:34986790 PubMed Central PMC8734282.
  25. Surov, A, Kim, JY, Aiello, M, Huang, W, Yankeelov, TE, Wienke, A et al.. Associations Between Dynamic Contrast Enhanced Magnetic Resonance Imaging and Clinically Relevant Histopathological Features in Breast Cancer: A Multicenter Analysis. In Vivo. ;36 (1):398-408. doi: 10.21873/invivo.12717. PubMed PMID:34972741 PubMed Central PMC8765187.
  26. Becker, H, Stuifbergen, AK, Lim, S, Kesler, SR. Health Promotion, Functional Abilities, and Quality of Life Before and During COVID-19 in People With Multiple Sclerosis. Nurs Res. ;71 (2):84-89. doi: 10.1097/NNR.0000000000000573. PubMed PMID:34967826 .
  27. Johnson, KE, Hoskote, AR, Rolin, DG, Kesler, SR. Correlates of mental health problems among students in Texas alternative high schools and school-level efforts to address mental health. Res Nurs Health. 2022;45 (2):183-193. doi: 10.1002/nur.22197. PubMed PMID:34822199 .
  28. Holland, MD, Morales, A, Simmons, S, Smith, B, Misko, SR, Jiang, X et al.. Disposable point-of-care portable perfusion phantom for quantitative DCE-MRI. Med Phys. 2022;49 (1):271-281. doi: 10.1002/mp.15372. PubMed PMID:34802148 .
  29. McGarry, SD, Brehler, M, Bukowy, JD, Lowman, AK, Bobholz, SA, Duenweg, SR et al.. Multi-Site Concordance of Diffusion-Weighted Imaging Quantification for Assessing Prostate Cancer Aggressiveness. J Magn Reson Imaging. 2022;55 (6):1745-1758. doi: 10.1002/jmri.27983. PubMed PMID:34767682 PubMed Central PMC9095769.
  30. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Correction to: Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):156. doi: 10.1007/s11307-021-01676-z. PubMed PMID:34729660 .
  31. Papadopoulos, C, Kolokithas-Ntoukas, A, Moreno, R, Fuentes, D, Loudos, G, Loukopoulos, VC et al.. Using kinetic Monte Carlo simulations to design efficient magnetic nanoparticles for clinical hyperthermia. Med Phys. 2022;49 (1):547-567. doi: 10.1002/mp.15317. PubMed PMID:34724215 .
  32. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):144-155. doi: 10.1007/s11307-021-01639-4. PubMed PMID:34611767 .
  33. Phillips, NS, Rao, V, Kmetz, L, Vela, R, Medick, S, Krull, K et al.. Changes in Brain Functional and Effective Connectivity After Treatment for Breast Cancer and Implications for Intervention Targets. Brain Connect. 2022;12 (4):385-397. doi: 10.1089/brain.2021.0049. PubMed PMID:34210168 .
Search PubMed
2021
  1. Akhter, F, Manrique-Bedoya, S, Moreau, C, Smith, AL, Feng, Y, Mayer, KM et al.. Assessment and Modeling of Plasmonic Photothermal Therapy Delivered via a Fiberoptic Microneedle Device Ex Vivo. Pharmaceutics. 2021;13 (12):. doi: 10.3390/pharmaceutics13122133. PubMed PMID:34959414 PubMed Central PMC8703536.
  2. Gutierrez, C, Al'Khafaji, AM, Brenner, E, Johnson, KE, Gohil, SH, Lin, Z et al.. Multifunctional barcoding with ClonMapper enables high-resolution study of clonal dynamics during tumor evolution and treatment. Nat Cancer. 2021;2 (7):758-772. doi: 10.1038/s43018-021-00222-8. PubMed PMID:34939038 PubMed Central PMC8691751.
  3. Morgan, D, Jost, TA, De Santiago, C, Brock, A. Applications of high-resolution clone tracking technologies in cancer. Curr Opin Biomed Eng. 2021;19 :. doi: 10.1016/j.cobme.2021.100317. PubMed PMID:34901584 PubMed Central PMC8658740.
  4. Lima, EABF, Faghihi, D, Philley, R, Yang, J, Virostko, J, Phillips, CM et al.. Bayesian calibration of a stochastic, multiscale agent-based model for predicting in vitro tumor growth. PLoS Comput Biol. 2021;17 (11):e1008845. doi: 10.1371/journal.pcbi.1008845. PubMed PMID:34843457 PubMed Central PMC8659698.
  5. Virostko, J, Sorace, AG, Slavkova, KP, Kazerouni, AS, Jarrett, AM, DiCarlo, JC et al.. Quantitative multiparametric MRI predicts response to neoadjuvant therapy in the community setting. Breast Cancer Res. 2021;23 (1):110. doi: 10.1186/s13058-021-01489-6. PubMed PMID:34838096 PubMed Central PMC8627106.
  6. Johnson, KE, Hoskote, AR, Rolin, DG, Kesler, SR. Correlates of mental health problems among students in Texas alternative high schools and school-level efforts to address mental health. Res Nurs Health. 2022;45 (2):183-193. doi: 10.1002/nur.22197. PubMed PMID:34822199 .
  7. Henneghan, AM, Fico, BG, Wright, ML, Kesler, SR, Harrison, ML. Effects of meditation compared to music listening on biomarkers in breast cancer survivors with cognitive complaints: secondary outcomes of a pilot randomized control trial. Explore (NY). 2021; :. doi: 10.1016/j.explore.2021.10.011. PubMed PMID:34802955 PubMed Central PMC9085959.
  8. Holland, MD, Morales, A, Simmons, S, Smith, B, Misko, SR, Jiang, X et al.. Disposable point-of-care portable perfusion phantom for quantitative DCE-MRI. Med Phys. 2022;49 (1):271-281. doi: 10.1002/mp.15372. PubMed PMID:34802148 .
  9. Kesler, SR, Tang, T, Henneghan, AM, Wright, M, Gaber, MW, Palesh, O et al.. Cross-Sectional Characterization of Local Brain Network Connectivity Pre and Post Breast Cancer Treatment and Distinct Association With Subjective Cognitive and Psychological Function. Front Neurol. 2021;12 :746493. doi: 10.3389/fneur.2021.746493. PubMed PMID:34777216 PubMed Central PMC8586413.
  10. McGarry, SD, Brehler, M, Bukowy, JD, Lowman, AK, Bobholz, SA, Duenweg, SR et al.. Multi-Site Concordance of Diffusion-Weighted Imaging Quantification for Assessing Prostate Cancer Aggressiveness. J Magn Reson Imaging. 2022;55 (6):1745-1758. doi: 10.1002/jmri.27983. PubMed PMID:34767682 PubMed Central PMC9095769.
  11. Papadopoulos, C, Kolokithas-Ntoukas, A, Moreno, R, Fuentes, D, Loudos, G, Loukopoulos, VC et al.. Using kinetic Monte Carlo simulations to design efficient magnetic nanoparticles for clinical hyperthermia. Med Phys. 2022;49 (1):547-567. doi: 10.1002/mp.15317. PubMed PMID:34724215 .
  12. Yang, J, Davis, T, Kazerouni, AS, Chen, YI, Bloom, MJ, Yeh, HC et al.. Longitudinal FRET Imaging of Glucose and Lactate Dynamics and Response to Therapy in Breast Cancer Cells. Mol Imaging Biol. 2022;24 (1):144-155. doi: 10.1007/s11307-021-01639-4. PubMed PMID:34611767 .
  13. Loyola, S, Huaman, A, Popuche, D, Castillo, E, Ampuero, JS, Silva, M et al.. Evaluation of Two Serological Assays for Diagnosing Zika Virus Infection. Diagnostics (Basel). 2021;11 (9):. doi: 10.3390/diagnostics11091696. PubMed PMID:34574037 PubMed Central PMC8469165.
  14. Nair, GB, Al-Katib, S, Podolsky, R, Quinn, T, Stevens, C, Castillo, E et al.. Dynamic lung compliance imaging from 4DCT-derived volume change estimation. Phys Med Biol. 2021;66 (21):. doi: 10.1088/1361-6560/ac29ce. PubMed PMID:34560677 .
  15. Jarrett, AM, Kazerouni, AS, Wu, C, Virostko, J, Sorace, AG, DiCarlo, JC et al.. Quantitative magnetic resonance imaging and tumor forecasting of breast cancer patients in the community setting. Nat Protoc. 2021;16 (11):5309-5338. doi: 10.1038/s41596-021-00617-y. PubMed PMID:34552262 .
  16. Pati, S, Sharma, V, Aslam, H, Thakur, SP, Akbari, H, Mang, A et al.. Estimating Glioblastoma Biophysical Growth Parameters Using Deep Learning Regression. Brainlesion. 2021;12658 :157-167. doi: 10.1007/978-3-030-72084-1_15. PubMed PMID:34514469 PubMed Central PMC8428542.
  17. Henneghan, AM, Lewis, KA, Gill, E, Franco-Rocha, OY, Vela, RD, Medick, S et al.. Describing cognitive function and psychosocial outcomes of COVID-19 survivors: A cross-sectional analysis. J Am Assoc Nurse Pract. 2021; :. doi: 10.1097/JXX.0000000000000647. PubMed PMID:34469360 PubMed Central PMC8882196.
  18. Virostko, J, Craddock, RC, Williams, JM, Triolo, TM, Hilmes, MA, Kang, H et al.. Development of a standardized MRI protocol for pancreas assessment in humans. PLoS One. 2021;16 (8):e0256029. doi: 10.1371/journal.pone.0256029. PubMed PMID:34428220 PubMed Central PMC8384163.
  19. Kim, M, Hong, S, Yankeelov, TE, Yeh, HC, Liu, YL. Deep Learning-Based classification of Breast Cancer Cells Using Transmembrane Receptor Dynamics. Bioinformatics. 2021; :. doi: 10.1093/bioinformatics/btab581. PubMed PMID:34390568 PubMed Central PMC8696113.
  20. Woldeamanuel, YW, Blayney, DW, Jo, B, Fisher, SE, Benedict, C, Oakley-Girvan, I et al.. Headache outcomes of a sleep behavioral intervention in breast cancer survivors: Secondary analysis of a randomized clinical trial. Cancer. 2021;127 (23):4492-4503. doi: 10.1002/cncr.33844. PubMed PMID:34357593 PubMed Central PMC8578351.
  21. Wu, C, Hormuth, DA 2nd, Easley, T, Eijkhout, V, Pineda, F, Karczmar, GS et al.. An in silico validation framework for quantitative DCE-MRI techniques based on a dynamic digital phantom. Med Image Anal. 2021;73 :102186. doi: 10.1016/j.media.2021.102186. PubMed PMID:34329903 PubMed Central PMC8453106.
  22. Özkan, A, Stolley, DL, Cressman, ENK, McMillin, M, DeMorrow, S, Yankeelov, TE et al.. Tumor Microenvironment Alters Chemoresistance of Hepatocellular Carcinoma Through CYP3A4 Metabolic Activity. Front Oncol. 2021;11 :662135. doi: 10.3389/fonc.2021.662135. PubMed PMID:34262860 PubMed Central PMC8273608.
  23. Yang, J, Virostko, J, Hormuth, DA 2nd, Liu, J, Brock, A, Kowalski, J et al.. An experimental-mathematical approach to predict tumor cell growth as a function of glucose availability in breast cancer cell lines. PLoS One. 2021;16 (7):e0240765. doi: 10.1371/journal.pone.0240765. PubMed PMID:34255770 PubMed Central PMC8277046.
  24. Phillips, NS, Rao, V, Kmetz, L, Vela, R, Medick, S, Krull, K et al.. Changes in Brain Functional and Effective Connectivity After Treatment for Breast Cancer and Implications for Intervention Targets. Brain Connect. 2022;12 (4):385-397. doi: 10.1089/brain.2021.0049. PubMed PMID:34210168 .
  25. Hormuth, DA 2nd, Phillips, CM, Wu, C, Lima, EABF, Lorenzo, G, Jha, PK et al.. Biologically-Based Mathematical Modeling of Tumor Vasculature and Angiogenesis via Time-Resolved Imaging Data. Cancers (Basel). 2021;13 (12):. doi: 10.3390/cancers13123008. PubMed PMID:34208448 PubMed Central PMC8234316.
  26. Slavkova, KP, DiCarlo, JC, Kazerouni, AS, Virostko, J, Sorace, AG, Patt, D et al.. Characterizing Errors in Pharmacokinetic Parameters from Analyzing Quantitative Abbreviated DCE-MRI Data in Breast Cancer. Tomography. 2021;7 (3):253-267. doi: 10.3390/tomography7030023. PubMed PMID:34201654 PubMed Central PMC8293327.
  27. Omran, M, Belcher, EK, Mohile, NA, Kesler, SR, Janelsins, MC, Hohmann, AG et al.. Review of the Role of the Brain in Chemotherapy-Induced Peripheral Neuropathy. Front Mol Biosci. 2021;8 :693133. doi: 10.3389/fmolb.2021.693133. PubMed PMID:34179101 PubMed Central PMC8226121.
  28. Harrison, RA, Sharafeldin, N, Rexer, JL, Streck, B, Petersen, M, Henneghan, AM et al.. Neurocognitive Impairment After Hematopoietic Stem Cell Transplant for Hematologic Malignancies: Phenotype and Mechanisms. Oncologist. 2021;26 (11):e2021-e2033. doi: 10.1002/onco.13867. PubMed PMID:34156729 PubMed Central PMC8571768.
  29. Moawad, AW, Ahmed, A, Fuentes, DT, Hazle, JD, Habra, MA, Elsayes, KM et al.. Machine learning-based texture analysis for differentiation of radiologically indeterminate small adrenal tumors on adrenal protocol CT scans. Abdom Radiol (NY). 2021;46 (10):4853-4863. doi: 10.1007/s00261-021-03136-2. PubMed PMID:34085089 .
  30. Tunc, B, Hormuth, D, Biros, G, Yankeelov, TE. Modeling of Glioma Growth With Mass Effect by Longitudinal Magnetic Resonance Imaging. IEEE Trans Biomed Eng. 2021;68 (12):3713-3724. doi: 10.1109/TBME.2021.3085523. PubMed PMID:34061731 PubMed Central PMC8604780.
  31. Liu, J, Hormuth, DA, Davis, T, Yang, J, McKenna, MT, Jarrett, AM et al.. A time-resolved experimental-mathematical model for predicting the response of glioma cells to single-dose radiation therapy. Integr Biol (Camb). 2021;13 (7):167-183. doi: 10.1093/intbio/zyab010. PubMed PMID:34060613 PubMed Central PMC8271006.
  32. Zuniga, K, Gadde, M, Scheftel, J, Senecal, K, Cressman, E, Van Dyke, M et al.. Collagen/kerateine multi-protein hydrogels as a thermally stable extracellular matrix for 3D in vitro models. Int J Hyperthermia. 2021;38 (1):830-845. doi: 10.1080/02656736.2021.1930202. PubMed PMID:34058945 .
  33. Woodall, RT, Hormuth Ii, DA, Wu, C, Abdelmalik, MRA, Phillips, WT, Bao, A et al.. Patient specific, imaging-informed modeling of rhenium-186 nanoliposome delivery via convection-enhanced delivery in glioblastoma multiforme. Biomed Phys Eng Express. 2021;7 (4):. doi: 10.1088/2057-1976/ac02a6. PubMed PMID:34050041 .
  34. Hormuth, DA 2nd, Jarrett, AM, Lorenzo, G, Lima, EABF, Wu, C, Chung, C et al.. Math, magnets, and medicine: enabling personalized oncology. Expert Rev Precis Med Drug Dev. 2021;6 (2):79-81. doi: 10.1080/23808993.2021.1878023. PubMed PMID:34027102 PubMed Central PMC8133535.
  35. Hormuth, DA 2nd, Jarrett, AM, Davis, T, Yankeelov, TE. Towards an Image-Informed Mathematical Model of In Vivo Response to Fractionated Radiation Therapy. Cancers (Basel). 2021;13 (8):. doi: 10.3390/cancers13081765. PubMed PMID:33917080 PubMed Central PMC8067722.
  36. Kesler, SR, Sleurs, C, McDonald, BC, Deprez, S, van der Plas, E, Nieman, BJ et al.. Brain Imaging in Pediatric Cancer Survivors: Correlates of Cognitive Impairment. J Clin Oncol. 2021;39 (16):1775-1785. doi: 10.1200/JCO.20.02315. PubMed PMID:33886371 PubMed Central PMC8260924.
  37. Hormuth, DA 2nd, Al Feghali, KA, Elliott, AM, Yankeelov, TE, Chung, C. Image-based personalization of computational models for predicting response of high-grade glioma to chemoradiation. Sci Rep. 2021;11 (1):8520. doi: 10.1038/s41598-021-87887-4. PubMed PMID:33875739 PubMed Central PMC8055874.
  38. Ma, J, Goodwani, S, Acton, PJ, Buggia-Prevot, V, Kesler, SR, Jamal, I et al.. Inhibition of dual leucine zipper kinase prevents chemotherapy-induced peripheral neuropathy and cognitive impairments. Pain. 2021;162 (10):2599-2612. doi: 10.1097/j.pain.0000000000002256. PubMed PMID:33872235 PubMed Central PMC8442742.
  39. Liu, TW, Gammon, ST, Yang, P, Fuentes, D, Piwnica-Worms, D. Myeloid cell-derived HOCl is a paracrine effector that trans-inhibits IKK/NF-κB in melanoma cells and limits early tumor progression. Sci Signal. 2021;14 (677):. doi: 10.1126/scisignal.aax5971. PubMed PMID:33824181 .
  40. Harrison, RA, Rao, V, Kesler, SR. The association of genetic polymorphisms with neuroconnectivity in breast cancer patients. Sci Rep. 2021;11 (1):6169. doi: 10.1038/s41598-021-85768-4. PubMed PMID:33731765 PubMed Central PMC7971072.
  41. Kline, JA, Camargo, CA Jr, Courtney, DM, Kabrhel, C, Nordenholz, KE, Aufderheide, T et al.. Clinical prediction rule for SARS-CoV-2 infection from 116 U.S. emergency departments 2-22-2021. PLoS One. 2021;16 (3):e0248438. doi: 10.1371/journal.pone.0248438. PubMed PMID:33690722 PubMed Central PMC7946184.
  42. Liu, TW, Gammon, ST, Fuentes, D, Piwnica-Worms, D. Multi-Modal Multi-Spectral Intravital Macroscopic Imaging of Signaling Dynamics in Real Time during Tumor-Immune Interactions. Cells. 2021;10 (3):. doi: 10.3390/cells10030489. PubMed PMID:33668735 PubMed Central PMC7996138.
  43. Henneghan, AM, Van Dyk, K, Kaufmann, T, Harrison, R, Gibbons, C, Heijnen, C et al.. Measuring Self-Reported Cancer-Related Cognitive Impairment: Recommendations from the Cancer Neuroscience Initiative Working Group. J Natl Cancer Inst. 2021; :. doi: 10.1093/jnci/djab027. PubMed PMID:33638633 PubMed Central PMC8849125.
  44. Klionsky, DJ, Abdel-Aziz, AK, Abdelfatah, S, Abdellatif, M, Abdoli, A, Abel, S et al.. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1. Autophagy. 2021;17 (1):1-382. doi: 10.1080/15548627.2020.1797280. PubMed PMID:33634751 PubMed Central PMC7996087.
  45. Whisenant, JG, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Moy, L et al.. Factors Affecting Image Quality and Lesion Evaluability in Breast Diffusion-weighted MRI: Observations from the ECOG-ACRIN Cancer Research Group Multisite Trial (A6702). J Breast Imaging. ;3 (1):44-56. doi: 10.1093/jbi/wbaa103. PubMed PMID:33543122 PubMed Central PMC7835633.
  46. Virostko, J, Kuketz, G, Higgins, E, Wu, C, Sorace, AG, DiCarlo, JC et al.. The rate of breast fibroglandular enhancement during dynamic contrast-enhanced MRI reflects response to neoadjuvant therapy. Eur J Radiol. 2021;136 :109534. doi: 10.1016/j.ejrad.2021.109534. PubMed PMID:33454460 PubMed Central PMC7897312.
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2019
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Search PubMed
2018
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Search PubMed
2017
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  15. Wang, D, Arlinghaus, LR, Yankeelov, TE, Yang, X, Smith, DS. Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast. Int J Biomed Imaging. 2017;2017 :7835749. doi: 10.1155/2017/7835749. PubMed PMID:28932236 PubMed Central PMC5592397.
  16. Sorace, AG, Harvey, S, Syed, A, Yankeelov, TE. Imaging Considerations and Interprofessional Opportunities in the Care of Breast Cancer Patients in the Neoadjuvant Setting. Semin Oncol Nurs. 2017;33 (4):425-439. doi: 10.1016/j.soncn.2017.08.008. PubMed PMID:28927763 PubMed Central PMC5667646.
  17. Barnes, SL, Sorace, AG, Whisenant, JG, McIntyre, JO, Kang, H, Yankeelov, TE et al.. DCE- and DW-MRI as early imaging biomarkers of treatment response in a preclinical model of triple negative breast cancer. NMR Biomed. 2017;30 (11):. doi: 10.1002/nbm.3799. PubMed PMID:28915312 .
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2016
  1. Lima, EABF, Oden, JT, Hormuth, DA 2nd, Yankeelov, TE, Almeida, RC. Selection, calibration, and validation of models of tumor growth. Math Models Methods Appl Sci. 2016;26 (12):2341-2368. doi: 10.1142/S021820251650055X. PubMed PMID:28827890 PubMed Central PMC5560997.
  2. Kurland, BF, Aggarwal, S, Yankeelov, TE, Gerstner, ER, Mountz, JM, Linden, HM et al.. Accrual Patterns for Clinical Studies Involving Quantitative Imaging: Results of an NCI Quantitative Imaging Network (QIN) Survey. Tomography. 2016;2 (4):276-282. doi: 10.18383/j.tom.2016.00169. PubMed PMID:28127586 PubMed Central PMC5260812.
  3. Malyarenko, DI, Wilmes, LJ, Arlinghaus, LR, Jacobs, MA, Huang, W, Helmer, KG et al.. QIN DAWG Validation of Gradient Nonlinearity Bias Correction Workflow for Quantitative Diffusion-Weighted Imaging in Multicenter Trials. Tomography. 2016;2 (4):396-405. doi: 10.18383/j.tom.2016.00214. PubMed PMID:28105469 PubMed Central PMC5241082.
  4. Arlinghaus, LR, Dortch, RD, Whisenant, JG, Kang, H, Abramson, RG, Yankeelov, TE et al.. Quantitative Magnetization Transfer Imaging of the Breast at 3.0 T: Reproducibility in Healthy Volunteers. Tomography. 2016;2 (4):260-266. doi: 10.18383/j.tom.2016.00142. PubMed PMID:28090588 PubMed Central PMC5228602.
  5. Whisenant, JG, Dortch, RD, Grissom, W, Kang, H, Arlinghaus, LR, Yankeelov, TE et al.. Bloch-Siegert B1-Mapping Improves Accuracy and Precision of Longitudinal Relaxation Measurements in the Breast at 3 T. Tomography. 2016;2 (4):250-259. doi: 10.18383/j.tom.2016.00133. PubMed PMID:28044146 PubMed Central PMC5201175.
  6. Weis, JA, Miga, MI, Yankeelov, TE. Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy. Comput Methods Appl Mech Eng. 2017;314 :494-512. doi: 10.1016/j.cma.2016.08.024. PubMed PMID:28042181 PubMed Central PMC5193147.
  7. Madankan, R, Stefan, W, Fahrenholtz, SJ, MacLellan, CJ, Hazle, JD, Stafford, RJ et al.. Accelerated magnetic resonance thermometry in the presence of uncertainties. Phys Med Biol. 2017;62 (1):214-245. doi: 10.1088/1361-6560/62/1/214. PubMed PMID:27991449 .
  8. Williams, JM, Arlinghaus, LR, Rani, SD, Shone, MD, Abramson, VG, Pendyala, P et al.. Towards real-time topical detection and characterization of FDG dose infiltration prior to PET imaging. Eur J Nucl Med Mol Imaging. 2016;43 (13):2374-2380. doi: 10.1007/s00259-016-3477-3. PubMed PMID:27557845 PubMed Central PMC5096989.
  9. O'Connor, JP, Aboagye, EO, Adams, JE, Aerts, HJ, Barrington, SF, Beer, AJ et al.. Imaging biomarker roadmap for cancer studies. Nat Rev Clin Oncol. 2017;14 (3):169-186. doi: 10.1038/nrclinonc.2016.162. PubMed PMID:27725679 PubMed Central PMC5378302.
  10. Sharifi, F, Sooriyarachchi, AC, Altural, H, Montazami, R, Rylander, MN, Hashemi, N et al.. Fiber Based Approaches as Medicine Delivery Systems. ACS Biomater Sci Eng. 2016;2 (9):1411-1431. doi: 10.1021/acsbiomaterials.6b00281. PubMed PMID:33440580 .
  11. Ma, C, Sastry, KS, Flore, M, Gehani, S, Al-Bozom, I, Feng, Y et al.. CrossLink: a novel method for cross-condition classification of cancer subtypes. BMC Genomics. 2016;17 Suppl 7 :549. doi: 10.1186/s12864-016-2903-z. PubMed PMID:27556419 PubMed Central PMC5001207.
  12. Yankeelov, TE, Miga, MI. Introduction to the Special Section on Clinical Applications of Multi-Scale Modeling. Ann Biomed Eng. 2016;44 (9):2589-90. doi: 10.1007/s10439-016-1702-7. PubMed PMID:27491887 PubMed Central PMC4984394.
  13. Virostko, J, Hilmes, M, Eitel, K, Moore, DJ, Powers, AC. Use of the Electronic Medical Record to Assess Pancreas Size in Type 1 Diabetes. PLoS One. 2016;11 (7):e0158825. doi: 10.1371/journal.pone.0158825. PubMed PMID:27391588 PubMed Central PMC4938534.
  14. Yankeelov, TE, An, G, Saut, O, Luebeck, EG, Popel, AS, Ribba, B et al.. Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success. Ann Biomed Eng. 2016;44 (9):2626-41. doi: 10.1007/s10439-016-1691-6. PubMed PMID:27384942 PubMed Central PMC4983505.
  15. Tam, AL, Figueira, TA, Gagea, M, Ensor, JE, Dixon, K, McWatters, A et al.. Irreversible Electroporation in the Epidural Space of the Porcine Spine: Effects on Adjacent Structures. Radiology. 2016;281 (3):763-771. doi: 10.1148/radiol.2016152688. PubMed PMID:27266723 PubMed Central PMC5952366.
  16. Huang, W, Chen, Y, Fedorov, A, Li, X, Jajamovich, GH, Malyarenko, DI et al.. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016;2 (1):56-66. doi: 10.18383/j.tom.2015.00184. PubMed PMID:27200418 PubMed Central PMC4869732.
  17. Chan, E, Arlinghaus, LR, Cardin, DB, Goff, L, Berlin, JD, Parikh, A et al.. Phase I trial of vorinostat added to chemoradiation with capecitabine in pancreatic cancer. Radiother Oncol. 2016;119 (2):312-8. doi: 10.1016/j.radonc.2016.04.013. PubMed PMID:27106554 PubMed Central PMC4961249.
  18. Akbari, H, Macyszyn, L, Da, X, Bilello, M, Wolf, RL, Martinez-Lage, M et al.. Imaging Surrogates of Infiltration Obtained Via Multiparametric Imaging Pattern Analysis Predict Subsequent Location of Recurrence of Glioblastoma. Neurosurgery. 2016;78 (4):572-80. doi: 10.1227/NEU.0000000000001202. PubMed PMID:26813856 PubMed Central PMC4853918.
  19. Sorace, AG, Quarles, CC, Whisenant, JG, Hanker, AB, McIntyre, JO, Sanchez, VM et al.. Trastuzumab improves tumor perfusion and vascular delivery of cytotoxic therapy in a murine model of HER2+ breast cancer: preliminary results. Breast Cancer Res Treat. 2016;155 (2):273-84. doi: 10.1007/s10549-016-3680-8. PubMed PMID:26791520 PubMed Central PMC4833210.
  20. Yankeelov, TE, Mankoff, DA, Schwartz, LH, Lieberman, FS, Buatti, JM, Mountz, JM et al.. Quantitative Imaging in Cancer Clinical Trials. Clin Cancer Res. 2016;22 (2):284-90. doi: 10.1158/1078-0432.CCR-14-3336. PubMed PMID:26773162 PubMed Central PMC4717912.
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  22. Abramson, RG, Arlinghaus, LR, Dula, AN, Quarles, CC, Stokes, AM, Weis, JA et al.. MR Imaging Biomarkers in Oncology Clinical Trials. Magn Reson Imaging Clin N Am. 2016;24 (1):11-29. doi: 10.1016/j.mric.2015.08.002. PubMed PMID:26613873 PubMed Central PMC4667554.
  23. Macyszyn, L, Akbari, H, Pisapia, JM, Da, X, Attiah, M, Pigrish, V et al.. Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques. Neuro Oncol. 2016;18 (3):417-25. doi: 10.1093/neuonc/nov127. PubMed PMID:26188015 PubMed Central PMC4767233.
  24. Gholami, A, Mang, A, Biros, G. An inverse problem formulation for parameter estimation of a reaction-diffusion model of low grade gliomas. J Math Biol. 2016;72 (1-2):409-33. doi: 10.1007/s00285-015-0888-x. PubMed PMID:25963601 PubMed Central PMC4643433.
  25. Malyarenko, DI, Newitt, D, J Wilmes, L, Tudorica, A, Helmer, KG, Arlinghaus, LR et al.. Demonstration of nonlinearity bias in the measurement of the apparent diffusion coefficient in multicenter trials. Magn Reson Med. 2016;75 (3):1312-23. doi: 10.1002/mrm.25754. PubMed PMID:25940607 PubMed Central PMC4630210.
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