Recent Publications
2021
- Virostko, J, Kuketz, G, Higgins, E, Wu, C, Sorace, AG, DiCarlo, JC et al.. The rate of breast fibroglandular enhancement during dynamic contrast-enhanced MRI reflects response to neoadjuvant therapy. Eur J Radiol. 2021;136 :109534. doi: 10.1016/j.ejrad.2021.109534. PubMed PMID:33454460 .
- Brunn, M, Himthani, N, Biros, G, Mehl, M, Mang, A. Fast GPU 3D diffeomorphic image registration. J Parallel Distrib Comput. 2021;149 :149-162. doi: 10.1016/j.jpdc.2020.11.006. PubMed PMID:33380769 PubMed Central PMC7769216.
- Berard, D, Navarro, JD, Bascos, G, Harb, A, Feng, Y, De Lorenzo, R et al.. Novel expandable architected breathing tube for improving airway securement in emergency care. J Mech Behav Biomed Mater. 2021;114 :104211. doi: 10.1016/j.jmbbm.2020.104211. PubMed PMID:33285451 .
- Gates, EDH, Weinberg, JS, Prabhu, SS, Lin, JS, Hamilton, J, Hazle, JD et al.. Estimating Local Cellular Density in Glioma Using MR Imaging Data. AJNR Am J Neuroradiol. 2021;42 (1):102-108. doi: 10.3174/ajnr.A6884. PubMed PMID:33243897 PubMed Central PMC7814791.
- McDonald, ES, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Whisenant, JG et al.. Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial. Radiology. 2021;298 (1):60-70. doi: 10.1148/radiol.2020202465. PubMed PMID:33201788 PubMed Central PMC7771995.
- Scheufele, K, Subramanian, S, Biros, G. Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. IEEE Trans Med Imaging. 2021;40 (1):193-204. doi: 10.1109/TMI.2020.3024264. PubMed PMID:32931431 .
- Viguerie, A, Lorenzo, G, Auricchio, F, Baroli, D, Hughes, TJR, Patton, A et al.. Simulating the spread of COVID-19 via a spatially-resolved susceptible-exposed-infected-recovered-deceased (SEIRD) model with heterogeneous diffusion. Appl Math Lett. 2021;111 :106617. doi: 10.1016/j.aml.2020.106617. PubMed PMID:32834475 PubMed Central PMC7361091.
Search PubMed
2020
- Fuentes, D, Thompson, E, Jacobsen, M, Crouch, AC, Layman, RR, Riviere, B et al.. Imaging-based characterization of convective tissue properties. Int J Hyperthermia. 2020;37 (3):155-163. doi: 10.1080/02656736.2020.1845403. PubMed PMID:33426993 .
- Stolley, DL, Crouch, AC, Özkan, A, Seeley, EH, Whitley, EM, Rylander, MN et al.. Combining Chemistry and Engineering for Hepatocellular Carcinoma: Nano-Scale and Smaller Therapies. Pharmaceutics. 2020;12 (12):. doi: 10.3390/pharmaceutics12121243. PubMed PMID:33419304 PubMed Central PMC7766014.
- Brunn, M, Himthani, N, Biros, G, Mehl, M, Mang, A. Fast GPU 3D diffeomorphic image registration. J Parallel Distrib Comput. 2021;149 :149-162. doi: 10.1016/j.jpdc.2020.11.006. PubMed PMID:33380769 PubMed Central PMC7769216.
- Virostko, J. Quantitative Magnetic Resonance Imaging of the Pancreas of Individuals With Diabetes. Front Endocrinol (Lausanne). 2020;11 :592349. doi: 10.3389/fendo.2020.592349. PubMed PMID:33343509 PubMed Central PMC7747766.
- Kazerouni, AS, Gadde, M, Gardner, A, Hormuth, DA 2nd, Jarrett, AM, Johnson, KE et al.. Integrating Quantitative Assays with Biologically Based Mathematical Modeling for Predictive Oncology. iScience. 2020;23 (12):101807. doi: 10.1016/j.isci.2020.101807. PubMed PMID:33299976 PubMed Central PMC7704401.
- Song, PN, Mansur, A, Dugger, KJ, Davis, TR, Howard, G, Yankeelov, TE et al.. CD4 T-cell immune stimulation of HER2 + breast cancer cells alters response to trastuzumab in vitro. Cancer Cell Int. 2020;20 (1):544. doi: 10.1186/s12935-020-01625-w. PubMed PMID:33292267 PubMed Central PMC7654187.
- Berard, D, Navarro, JD, Bascos, G, Harb, A, Feng, Y, De Lorenzo, R et al.. Novel expandable architected breathing tube for improving airway securement in emergency care. J Mech Behav Biomed Mater. 2021;114 :104211. doi: 10.1016/j.jmbbm.2020.104211. PubMed PMID:33285451 .
- Gates, EDH, Weinberg, JS, Prabhu, SS, Lin, JS, Hamilton, J, Hazle, JD et al.. Estimating Local Cellular Density in Glioma Using MR Imaging Data. AJNR Am J Neuroradiol. 2021;42 (1):102-108. doi: 10.3174/ajnr.A6884. PubMed PMID:33243897 PubMed Central PMC7814791.
- Jarrett, AM, Hormuth, DA, Adhikarla, V, Sahoo, P, Abler, D, Tumyan, L et al.. Towards integration of 64Cu-DOTA-trastuzumab PET-CT and MRI with mathematical modeling to predict response to neoadjuvant therapy in HER2 + breast cancer. Sci Rep. 2020;10 (1):20518. doi: 10.1038/s41598-020-77397-0. PubMed PMID:33239688 PubMed Central PMC7688955.
- Johnson, KE, Howard, GR, Morgan, D, Brenner, EA, Gardner, AL, Durrett, RE et al.. Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer. Phys Biol. 2020;18 (1):016001. doi: 10.1088/1478-3975/abb09c. PubMed PMID:33215611 .
- McDonald, ES, Romanoff, J, Rahbar, H, Kitsch, AE, Harvey, SM, Whisenant, JG et al.. Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial. Radiology. 2021;298 (1):60-70. doi: 10.1148/radiol.2020202465. PubMed PMID:33201788 PubMed Central PMC7771995.
- Jarrett, AM, Hormuth, DA 2nd, Wu, C, Kazerouni, AS, Ekrut, DA, Virostko, J et al.. Evaluating patient-specific neoadjuvant regimens for breast cancer via a mathematical model constrained by quantitative magnetic resonance imaging data. Neoplasia. 2020;22 (12):820-830. doi: 10.1016/j.neo.2020.10.011. PubMed PMID:33197744 PubMed Central PMC7677708.
- Kreeger, PK, Brock, A, Gibbs, HC, Grande-Allen, KJ, Huang, AH, Masters, KS et al.. Ten simple rules for women principal investigators during a pandemic. PLoS Comput Biol. 2020;16 (10):e1008370. doi: 10.1371/journal.pcbi.1008370. PubMed PMID:33119585 PubMed Central PMC7595267.
- Scheufele, K, Subramanian, S, Mang, A, Biros, G, Mehl, M. IMAGE-DRIVEN BIOPHYSICAL TUMOR GROWTH MODEL CALIBRATION. SIAM J Sci Comput. 2020;42 (3):B549-B580. doi: 10.1137/19M1275280. PubMed PMID:33071533 PubMed Central PMC7561052.
- Sorace, AG, Elkassem, AA, Galgano, SJ, Lapi, SE, Larimer, BM, Partridge, SC et al.. Imaging for Response Assessment in Cancer Clinical Trials. Semin Nucl Med. 2020;50 (6):488-504. doi: 10.1053/j.semnuclmed.2020.05.001. PubMed PMID:33059819 PubMed Central PMC7573201.
- Mitchell, D, Hwang, KP, Bankson, JA, Stafford, RJ, Banerjee, S, Takei, N et al.. An information theory model for optimizing quantitative magnetic resonance imaging acquisitions. Phys Med Biol. 2020; :. doi: 10.1088/1361-6560/abb9f6. PubMed PMID:32947269 .
- Scheufele, K, Subramanian, S, Biros, G. Fully Automatic Calibration of Tumor-Growth Models Using a Single mpMRI Scan. IEEE Trans Med Imaging. 2021;40 (1):193-204. doi: 10.1109/TMI.2020.3024264. PubMed PMID:32931431 .
- Muthusivarajan, R, Allen, WJ, Pehere, AD, Sokolov, KV, Fuentes, D. Role of alkylated residues in the tetrapeptide self-assembly-A molecular dynamics study. J Comput Chem. 2020;41 (31):2634-2640. doi: 10.1002/jcc.26419. PubMed PMID:32930440 .
- Shoghi, KI, Badea, CT, Blocker, SJ, Chenevert, TL, Laforest, R, Lewis, MT et al.. Co-Clinical Imaging Resource Program (CIRP): Bridging the Translational Divide to Advance Precision Medicine. Tomography. 2020;6 (3):273-287. doi: 10.18383/j.tom.2020.00023. PubMed PMID:32879897 PubMed Central PMC7442091.
- Viguerie, A, Veneziani, A, Lorenzo, G, Baroli, D, Aretz-Nellesen, N, Patton, A et al.. Diffusion-reaction compartmental models formulated in a continuum mechanics framework: application to COVID-19, mathematical analysis, and numerical study. Comput Mech. 2020; :1-22. doi: 10.1007/s00466-020-01888-0. PubMed PMID:32836602 PubMed Central PMC7426072.
- Jha, PK, Cao, L, Oden, JT. Bayesian-based predictions of COVID-19 evolution in Texas using multispecies mixture-theoretic continuum models. Comput Mech. 2020; :1-14. doi: 10.1007/s00466-020-01889-z. PubMed PMID:32836598 PubMed Central PMC7394277.
- Viguerie, A, Lorenzo, G, Auricchio, F, Baroli, D, Hughes, TJR, Patton, A et al.. Simulating the spread of COVID-19 via a spatially-resolved susceptible-exposed-infected-recovered-deceased (SEIRD) model with heterogeneous diffusion. Appl Math Lett. 2021;111 :106617. doi: 10.1016/j.aml.2020.106617. PubMed PMID:32834475 PubMed Central PMC7361091.
- Bastos, DCA, Fuentes, DT, Traylor, J, Weinberg, J, Kumar, VA, Stafford, J et al.. The use of laser interstitial thermal therapy in the treatment of brain metastases: a literature review. Int J Hyperthermia. 2020;37 (2):53-60. doi: 10.1080/02656736.2020.1748238. PubMed PMID:32672122 .
- Gadde, M, Phillips, C, Ghousifam, N, Sorace, AG, Wong, E, Krishnamurthy, S et al.. In vitro vascularized tumor platform for modeling tumor-vasculature interactions of inflammatory breast cancer. Biotechnol Bioeng. 2020; :. doi: 10.1002/bit.27487. PubMed PMID:32648934 .
- Syed, AK, Whisenant, JG, Barnes, SL, Sorace, AG, Yankeelov, TE. Multiparametric Analysis of Longitudinal Quantitative MRI data to Identify Distinct Tumor Habitats in Preclinical Models of Breast Cancer. Cancers (Basel). 2020;12 (6):. doi: 10.3390/cancers12061682. PubMed PMID:32599906 PubMed Central PMC7352623.
- Bell, LC, Semmineh, N, An, H, Eldeniz, C, Wahl, R, Schmainda, KM et al.. Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge. Tomography. 2020;6 (2):203-208. doi: 10.18383/j.tom.2020.00012. PubMed PMID:32548297 PubMed Central PMC7289259.
- Whisenant, JG, Williams, JM, Kang, H, Arlinghaus, LR, Abramson, RG, Abramson, VG et al.. Quantitative Comparison of Prone and Supine PERCIST Measurements in Breast Cancer. Tomography. 2020;6 (2):170-176. doi: 10.18383/j.tom.2020.00002. PubMed PMID:32548293 PubMed Central PMC7289244.
- Bastos, DCA, Weinberg, J, Kumar, VA, Fuentes, DT, Stafford, J, Li, J et al.. Laser Interstitial Thermal Therapy in the treatment of brain metastases and radiation necrosis. Cancer Lett. 2020;489 :9-18. doi: 10.1016/j.canlet.2020.05.014. PubMed PMID:32504657 .
- Mang, A, Bakas, S, Subramanian, S, Davatzikos, C, Biros, G. Integrated Biophysical Modeling and Image Analysis: Application to Neuro-Oncology. Annu Rev Biomed Eng. 2020;22 :309-341. doi: 10.1146/annurev-bioeng-062117-121105. PubMed PMID:32501772 PubMed Central PMC7520881.
- Moawad, AW, Fuentes, D, Khalaf, AM, Blair, KJ, Szklaruk, J, Qayyum, A et al.. Feasibility of Automated Volumetric Assessment of Large Hepatocellular Carcinomas' Responses to Transarterial Chemoembolization. Front Oncol. 2020;10 :572. doi: 10.3389/fonc.2020.00572. PubMed PMID:32457831 PubMed Central PMC7221016.
- Özkan, A, Stolley, D, Cressman, ENK, McMillin, M, DeMorrow, S, Yankeelov, TE et al.. The Influence of Chronic Liver Diseases on Hepatic Vasculature: A Liver-on-a-chip Review. Micromachines (Basel). 2020;11 (5):. doi: 10.3390/mi11050487. PubMed PMID:32397454 PubMed Central PMC7281532.
- Faghihi, D, Feng, X, Lima, EABF, Oden, JT, Yankeelov, TE. A Coupled Mass Transport and Deformation Theory of Multi-constituent Tumor Growth. J Mech Phys Solids. 2020;139 :. doi: 10.1016/j.jmps.2020.103936. PubMed PMID:32394987 PubMed Central PMC7213200.
- Actor, JA, Fuentes, DT, Rivière, B. Identification of Kernels in a Convolutional Neural Network: Connections Between Level Set Equation and Deep Learning for Image Segmentation. Proc SPIE Int Soc Opt Eng. 2020;11313 :. doi: 10.1117/12.2548871. PubMed PMID:32377028 PubMed Central PMC7202368.
- Jarrett, AM, Faghihi, D, Ii, DAH, Lima, EABF, Virostko, J, Biros, G et al.. Optimal Control Theory for Personalized Therapeutic Regimens in Oncology: Background, History, Challenges, and Opportunities. J Clin Med. 2020;9 (5):. doi: 10.3390/jcm9051314. PubMed PMID:32370195 PubMed Central PMC7290915.
- Bloom, MJ, Jarrett, AM, Triplett, TA, Syed, AK, Davis, T, Yankeelov, TE et al.. Anti-HER2 induced myeloid cell alterations correspond with increasing vascular maturation in a murine model of HER2+ breast cancer. BMC Cancer. 2020;20 (1):359. doi: 10.1186/s12885-020-06868-4. PubMed PMID:32345237 PubMed Central PMC7189470.
- Fuentes, D, Fahrenholtz, SJ, Guo, C, MacLellan, CJ, Layman, RR, Rivière, B et al.. Mathematical modeling of mass and energy transport for thermoembolization. Int J Hyperthermia. 2020;37 (1):356-365. doi: 10.1080/02656736.2020.1749317. PubMed PMID:32308071 .
- Phillips, CM, Lima, EABF, Woodall, RT, Brock, A, Yankeelov, TE. A hybrid model of tumor growth and angiogenesis: In silico experiments. PLoS One. 2020;15 (4):e0231137. doi: 10.1371/journal.pone.0231137. PubMed PMID:32275674 PubMed Central PMC7147760.
- Williams, JM, Hilmes, MA, Archer, B, Dulaney, A, Du, L, Kang, H et al.. Repeatability and Reproducibility of Pancreas Volume Measurements Using MRI. Sci Rep. 2020;10 (1):4767. doi: 10.1038/s41598-020-61759-9. PubMed PMID:32179809 PubMed Central PMC7076034.
- Brenner, E, Tiwari, GR, Kapoor, M, Liu, Y, Brock, A, Mayfield, RD et al.. Single cell transcriptome profiling of the human alcohol-dependent brain. Hum Mol Genet. 2020;29 (7):1144-1153. doi: 10.1093/hmg/ddaa038. PubMed PMID:32142123 PubMed Central PMC7206851.
- Ahmed, AA, Elmohr, MM, Fuentes, D, Habra, MA, Fisher, SB, Perrier, ND et al.. Radiomic mapping model for prediction of Ki-67 expression in adrenocortical carcinoma. Clin Radiol. 2020;75 (6):479.e17-479.e22. doi: 10.1016/j.crad.2020.01.012. PubMed PMID:32089260 .
- Papadopoulos, C, Efthimiadou, EK, Pissas, M, Fuentes, D, Boukos, N, Psycharis, V et al.. Magnetic fluid hyperthermia simulations in evaluation of SAR calculation methods. Phys Med. 2020;71 :39-52. doi: 10.1016/j.ejmp.2020.02.011. PubMed PMID:32088564 .
- Wu, C, Hormuth, DA, Oliver, TA, Pineda, F, Lorenzo, G, Karczmar, GS et al.. Patient-Specific Characterization of Breast Cancer Hemodynamics Using Image-Guided Computational Fluid Dynamics. IEEE Trans Med Imaging. 2020;39 (9):2760-2771. doi: 10.1109/TMI.2020.2975375. PubMed PMID:32086203 PubMed Central PMC7438313.
- Chou, CK, Liu, YL, Chen, YI, Huang, PJ, Tsou, PH, Chen, CT et al.. Digital Receptor Occupancy Assay in Quantifying On- and Off-Target Binding Affinities of Therapeutic Antibodies. ACS Sens. 2020;5 (2):296-302. doi: 10.1021/acssensors.9b01736. PubMed PMID:32073836 PubMed Central PMC7093205.
- Gates, EDH, Lin, JS, Weinberg, JS, Prabhu, SS, Hamilton, J, Hazle, JD et al.. Imaging-Based Algorithm for the Local Grading of Glioma. AJNR Am J Neuroradiol. 2020;41 (3):400-407. doi: 10.3174/ajnr.A6405. PubMed PMID:32029466 PubMed Central PMC7077885.
- Hormuth, DA 2nd, Jarrett, AM, Yankeelov, TE. Forecasting tumor and vasculature response dynamics to radiation therapy via image based mathematical modeling. Radiat Oncol. 2020;15 (1):4. doi: 10.1186/s13014-019-1446-2. PubMed PMID:31898514 PubMed Central PMC6941255.
- Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Reply to Appropriate considerations of "rural" in National Cancer Data Base analyses. Cancer. 2020;126 (7):1586-1587. doi: 10.1002/cncr.32650. PubMed PMID:31821541 PubMed Central PMC7069778.
- Lele, TP, Brock, A, Peyton, SR. Emerging Concepts and Tools in Cell Mechanomemory. Ann Biomed Eng. 2020;48 (7):2103-2112. doi: 10.1007/s10439-019-02412-z. PubMed PMID:31745676 .
- Bastos, DCA, Rao, G, Oliva, ICG, Loree, JM, Fuentes, DT, Stafford, RJ et al.. Predictors of Local Control of Brain Metastasis Treated With Laser Interstitial Thermal Therapy. Neurosurgery. 2020;87 (1):112-122. doi: 10.1093/neuros/nyz357. PubMed PMID:31539421 .
Search PubMed
2019
- Morshid, A, Elsayes, KM, Khalaf, AM, Elmohr, MM, Yu, J, Kaseb, AO et al.. A machine learning model to predict hepatocellular carcinoma response to transcatheter arterial chemoembolization. Radiol Artif Intell. 2019;1 (5):. doi: 10.1148/ryai.2019180021. PubMed PMID:31858078 PubMed Central PMC6920060.
- Scheufele, K, Mang, A, Gholami, A, Davatzikos, C, Biros, G, Mehl, M et al.. Coupling brain-tumor biophysical models and diffeomorphic image registration. Comput Methods Appl Mech Eng. 2019;347 :533-567. doi: 10.1016/j.cma.2018.12.008. PubMed PMID:31857736 PubMed Central PMC6922029.
- Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Reply to Appropriate considerations of "rural" in National Cancer Data Base analyses. Cancer. 2020;126 (7):1586-1587. doi: 10.1002/cncr.32650. PubMed PMID:31821541 PubMed Central PMC7069778.
- Liu, YL, Horning, AM, Lieberman, B, Kim, M, Lin, CK, Hung, CN et al.. Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer. Cancers (Basel). 2019;11 (12):. doi: 10.3390/cancers11121910. PubMed PMID:31805710 PubMed Central PMC6966510.
- Lele, TP, Brock, A, Peyton, SR. Emerging Concepts and Tools in Cell Mechanomemory. Ann Biomed Eng. 2020;48 (7):2103-2112. doi: 10.1007/s10439-019-02412-z. PubMed PMID:31745676 .
- Khalaf, AM, Fuentes, D, Morshid, A, Kaseb, AO, Hassan, M, Hazle, JD et al.. Hepatocellular carcinoma response to transcatheter arterial chemoembolisation using automatically generated pre-therapeutic tumour volumes by a random forest-based segmentation protocol. Clin Radiol. 2019;74 (12):974.e13-974.e20. doi: 10.1016/j.crad.2019.07.023. PubMed PMID:31521326 .
- Chen, YI, Chang, YJ, Nguyen, TD, Liu, C, Phillion, S, Kuo, YA et al.. Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method. J Am Chem Soc. 2019;141 (40):15747-15750. doi: 10.1021/jacs.9b08036. PubMed PMID:31509386 PubMed Central PMC7179573.
- Jarrett, AM, Shah, A, Bloom, MJ, McKenna, MT, Hormuth, DA 2nd, Yankeelov, TE et al.. Experimentally-driven mathematical modeling to improve combination targeted and cytotoxic therapy for HER2+ breast cancer. Sci Rep. 2019;9 (1):12830. doi: 10.1038/s41598-019-49073-5. PubMed PMID:31492947 PubMed Central PMC6731321.
- Thrower, SL, Kandala, SK, Fuentes, D, Stefan, W, Sowko, N, Huang, M et al.. A compressed sensing approach to immobilized nanoparticle localization for superparamagnetic relaxometry. Phys Med Biol. 2019;64 (19):194001. doi: 10.1088/1361-6560/ab3c06. PubMed PMID:31422952 .
- Gates, EDH, Yang, J, Fukumura, K, Lin, JS, Weinberg, JS, Prabhu, SS et al.. Spatial Distance Correlates With Genetic Distance in Diffuse Glioma. Front Oncol. 2019;9 :676. doi: 10.3389/fonc.2019.00676. PubMed PMID:31417865 PubMed Central PMC6682615.
- Lorenzo, G, Pérez-García, VM, Mariño, A, Pérez-Romasanta, LA, Reali, A, Gomez, H et al.. Mechanistic modelling of prostate-specific antigen dynamics shows potential for personalized prediction of radiation therapy outcome. J R Soc Interface. 2019;16 (157):20190195. doi: 10.1098/rsif.2019.0195. PubMed PMID:31409240 PubMed Central PMC6731509.
- Johnson, KE, Howard, G, Mo, W, Strasser, MK, Lima, EABF, Huang, S et al.. Cancer cell population growth kinetics at low densities deviate from the exponential growth model and suggest an Allee effect. PLoS Biol. 2019;17 (8):e3000399. doi: 10.1371/journal.pbio.3000399. PubMed PMID:31381560 PubMed Central PMC6695196.
- Traylor, JI, Bastos, DCA, Fuentes, D, Muir, M, Patel, R, Kumar, VA et al.. Dynamic Contrast-Enhanced MRI in Patients with Brain Metastases Undergoing Laser Interstitial Thermal Therapy: A Pilot Study. AJNR Am J Neuroradiol. 2019;40 (9):1451-1457. doi: 10.3174/ajnr.A6144. PubMed PMID:31371353 PubMed Central PMC7048461.
- Elmohr, MM, Fuentes, D, Habra, MA, Bhosale, PR, Qayyum, AA, Gates, E et al.. Machine learning-based texture analysis for differentiation of large adrenal cortical tumours on CT. Clin Radiol. 2019;74 (10):818.e1-818.e7. doi: 10.1016/j.crad.2019.06.021. PubMed PMID:31362884 .
- Kabacaoğlu, G, Biros, G. Machine learning acceleration of simulations of Stokesian suspensions. Phys Rev E. 2019;99 (6-1):063313. doi: 10.1103/PhysRevE.99.063313. PubMed PMID:31330700 .
- Virostko, J, Capasso, A, Yankeelov, TE, Goodgame, B. Recent trends in the age at diagnosis of colorectal cancer in the US National Cancer Data Base, 2004-2015. Cancer. 2019;125 (21):3828-3835. doi: 10.1002/cncr.32347. PubMed PMID:31328273 PubMed Central PMC6788938.
- McKenna, MT, Weis, JA, Quaranta, V, Yankeelov, TE. Leveraging Mathematical Modeling to Quantify Pharmacokinetic and Pharmacodynamic Pathways: Equivalent Dose Metric. Front Physiol. 2019;10 :616. doi: 10.3389/fphys.2019.00616. PubMed PMID:31178753 PubMed Central PMC6538812.
- Chakraborty, S, Ozkan, A, Rylander, MN, Woodward, WA, Vlachos, P. Mixture theory modeling for characterizing solute transport in breast tumor tissues. J Biol Eng. 2019;13 :46. doi: 10.1186/s13036-019-0178-z. PubMed PMID:31160921 PubMed Central PMC6542036.
- Subramanian, S, Gholami, A, Biros, G. Simulation of glioblastoma growth using a 3D multispecies tumor model with mass effect. J Math Biol. 2019;79 (3):941-967. doi: 10.1007/s00285-019-01383-y. PubMed PMID:31127329 PubMed Central PMC7564807.
- Fuentes, D, Ahmed, K, Lin, JS, Abdel-Wahab, R, Kaseb, AO, Hassan, M et al.. Automated Volumetric Assessment of Hepatocellular Carcinoma Response to Sorafenib: A Pilot Study. J Comput Assist Tomogr. ;43 (3):499-506. doi: 10.1097/RCT.0000000000000866. PubMed PMID:31082956 .
- Rockne, RC, Hawkins-Daarud, A, Swanson, KR, Sluka, JP, Glazier, JA, Macklin, P et al.. The 2019 mathematical oncology roadmap. Phys Biol. 2019;16 (4):041005. doi: 10.1088/1478-3975/ab1a09. PubMed PMID:30991381 PubMed Central PMC6655440.
- Hormuth, DA 2nd, Jarrett, AM, Feng, X, Yankeelov, TE. Calibrating a Predictive Model of Tumor Growth and Angiogenesis with Quantitative MRI. Ann Biomed Eng. 2019;47 (7):1539-1551. doi: 10.1007/s10439-019-02262-9. PubMed PMID:30963385 PubMed Central PMC6544501.
- Hormuth, DA 2nd, Sorace, AG, Virostko, J, Abramson, RG, Bhujwalla, ZM, Enriquez-Navas, P et al.. Translating preclinical MRI methods to clinical oncology. J Magn Reson Imaging. 2019;50 (5):1377-1392. doi: 10.1002/jmri.26731. PubMed PMID:30925001 PubMed Central PMC6766430.
- Feng, X, Hormuth, DA 2nd, Yankeelov, TE. An adjoint-based method for a linear mechanically-coupled tumor model: Application to estimate the spatial variation of murine glioma growth based on diffusion weighted magnetic resonance imaging. Comput Mech. 2019;63 (2):159-180. doi: 10.1007/s00466-018-1589-2. PubMed PMID:30880856 PubMed Central PMC6415692.
- Yankeelov, TE. The Quantitative Imaging Network: A Decade of Achievement. Tomography. 2019;5 (1):A8. doi: 10.18383/j.tom.2019.00999. PubMed PMID:30854462 PubMed Central PMC6403024.
- Bell, LC, Semmineh, N, An, H, Eldeniz, C, Wahl, R, Schmainda, KM et al.. Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO). Tomography. 2019;5 (1):110-117. doi: 10.18383/j.tom.2018.00041. PubMed PMID:30854448 PubMed Central PMC6403027.
- Huang, W, Chen, Y, Fedorov, A, Li, X, Jajamovich, GH, Malyarenko, DI et al.. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II. Tomography. 2019;5 (1):99-109. doi: 10.18383/j.tom.2018.00027. PubMed PMID:30854447 PubMed Central PMC6403046.
- Virostko, J, Sorace, AG, Wu, C, Ekrut, D, Jarrett, AM, Upadhyaya, RM et al.. Magnetization Transfer MRI of Breast Cancer in the Community Setting: Reproducibility and Preliminary Results in Neoadjuvant Therapy. Tomography. 2019;5 (1):44-52. doi: 10.18383/j.tom.2018.00019. PubMed PMID:30854441 PubMed Central PMC6403021.
- Liu, YL, Chou, CK, Kim, M, Vasisht, R, Kuo, YA, Ang, P et al.. Assessing metastatic potential of breast cancer cells based on EGFR dynamics. Sci Rep. 2019;9 (1):3395. doi: 10.1038/s41598-018-37625-0. PubMed PMID:30833579 PubMed Central PMC6399327.
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2018
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- Fahrenholtz, SJ, Madankan, R, Danish, S, Hazle, JD, Stafford, RJ, Fuentes, D et al.. Theoretical model for laser ablation outcome predictions in brain: calibration and validation on clinical MR thermometry images. Int J Hyperthermia. 2018;34 (1):101-111. doi: 10.1080/02656736.2017.1319974. PubMed PMID:28540820 PubMed Central PMC6295207.
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2017
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2016
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- Arlinghaus, LR, Dortch, RD, Whisenant, JG, Kang, H, Abramson, RG, Yankeelov, TE et al.. Quantitative Magnetization Transfer Imaging of the Breast at 3.0 T: Reproducibility in Healthy Volunteers. Tomography. 2016;2 (4):260-266. doi: 10.18383/j.tom.2016.00142. PubMed PMID:28090588 PubMed Central PMC5228602.
- Whisenant, JG, Dortch, RD, Grissom, W, Kang, H, Arlinghaus, LR, Yankeelov, TE et al.. Bloch-Siegert B1-Mapping Improves Accuracy and Precision of Longitudinal Relaxation Measurements in the Breast at 3 T. Tomography. 2016;2 (4):250-259. doi: 10.18383/j.tom.2016.00133. PubMed PMID:28044146 PubMed Central PMC5201175.
- Weis, JA, Miga, MI, Yankeelov, TE. Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy. Comput Methods Appl Mech Eng. 2017;314 :494-512. doi: 10.1016/j.cma.2016.08.024. PubMed PMID:28042181 PubMed Central PMC5193147.
- Madankan, R, Stefan, W, Fahrenholtz, SJ, MacLellan, CJ, Hazle, JD, Stafford, RJ et al.. Accelerated magnetic resonance thermometry in the presence of uncertainties. Phys Med Biol. 2017;62 (1):214-245. doi: 10.1088/1361-6560/62/1/214. PubMed PMID:27991449 .
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- Yankeelov, TE, Miga, MI. Introduction to the Special Section on Clinical Applications of Multi-Scale Modeling. Ann Biomed Eng. 2016;44 (9):2589-90. doi: 10.1007/s10439-016-1702-7. PubMed PMID:27491887 PubMed Central PMC4984394.
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- Yankeelov, TE, An, G, Saut, O, Luebeck, EG, Popel, AS, Ribba, B et al.. Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success. Ann Biomed Eng. 2016;44 (9):2626-41. doi: 10.1007/s10439-016-1691-6. PubMed PMID:27384942 PubMed Central PMC4983505.
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- Akbari, H, Macyszyn, L, Da, X, Bilello, M, Wolf, RL, Martinez-Lage, M et al.. Imaging Surrogates of Infiltration Obtained Via Multiparametric Imaging Pattern Analysis Predict Subsequent Location of Recurrence of Glioblastoma. Neurosurgery. 2016;78 (4):572-80. doi: 10.1227/NEU.0000000000001202. PubMed PMID:26813856 PubMed Central PMC4853918.
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