Recent Publications

2024
  1. Mulholland, MM, Stuifbergen, A, De La Torre Schutz, A, Franco Rocha, OY, Blayney, DW, Kesler, SR et al.. Evidence of compensatory neural hyperactivity in a subgroup of chemotherapy-treated breast cancer survivors and its association with brain aging. medRxiv. 2024; :. doi: 10.1101/2024.04.22.24306190. PubMed PMID:38712178 PubMed Central PMC11071584.
  2. Muthusivarajan, R, Celaya, A, Yung, JP, Long, JP, Viswanath, SE, Marcus, DS et al.. Evaluating the relationship between magnetic resonance image quality metrics and deep learning-based segmentation accuracy of brain tumors. Med Phys. 2024; :. doi: 10.1002/mp.17059. PubMed PMID:38640464 .
  3. Brown, C, Ray, C, Kuketz, G, Virostko, J. Changes in Pancreas Volume in Living Donor Liver Transplant Recipients. Transplantation. 2024; :. doi: 10.1097/TP.0000000000005031. PubMed PMID:38637920 .
  4. Beresin, EV, Guerrero, APS, Morreale, MK, Thomas, LA, Castillo, EG, Aggarwal, R et al.. Addressing the Youth Mental Health Epidemic. Acad Psychiatry. 2024; :. doi: 10.1007/s40596-024-01967-x. PubMed PMID:38632217 .
  5. Kesler, SR, Harrison, RA, Schutz, AT, Michener, H, Bean, P, Vallone, V et al.. Strength of spatial correlation between gray matter connectivity and patterns of proto-oncogene and neural network construction gene expression is associated with diffuse glioma survival. Front Neurol. 2024;15 :1345520. doi: 10.3389/fneur.2024.1345520. PubMed PMID:38601343 PubMed Central PMC11004301.
  6. Lorenzo, G, Ahmed, SR, Hormuth Ii, DA, Vaughn, B, Kalpathy-Cramer, J, Solorio, L et al.. Patient-Specific, Mechanistic Models of Tumor Growth Incorporating Artificial Intelligence and Big Data. Annu Rev Biomed Eng. 2024; :. doi: 10.1146/annurev-bioeng-081623-025834. PubMed PMID:38594947 .
  7. Kleckner, IR, Manuweera, T, Lin, PJ, Chung, KH, Kleckner, AS, Gewandter, JS et al.. Pilot trial testing the effects of exercise on chemotherapy-induced peripheral neurotoxicity (CIPN) and the interoceptive brain system. Res Sq. 2024; :. doi: 10.21203/rs.3.rs-4022351/v1. PubMed PMID:38559210 PubMed Central PMC10980099.
  8. Virostko, J, Tirkes, T. Cross-sectional imaging of the pancreas in diabetes. Abdom Radiol (NY). 2024; :. doi: 10.1007/s00261-024-04310-y. PubMed PMID:38557767 .
  9. Nikzad, N, Fuentes, DT, Roach, M, Chowdhury, T, Cagley, M, Badawy, M et al.. Enhancement Pattern Mapping for Early Detection of Hepatocellular Carcinoma in Patients with Cirrhosis. J Hepatocell Carcinoma. 2024;11 :595-606. doi: 10.2147/JHC.S449996. PubMed PMID:38525156 PubMed Central PMC10961013.
  10. Laubenbacher, R, Adler, F, An, G, Castiglione, F, Eubank, S, Fonseca, LL et al.. Toward mechanistic medical digital twins: some use cases in immunology. Front Digit Health. 2024;6 :1349595. doi: 10.3389/fdgth.2024.1349595. PubMed PMID:38515550 PubMed Central PMC10955144.
  11. Wu, C, Hormuth, DA 2nd, Easley, T, Pineda, F, Karczmar, GS, Yankeelov, TE et al.. Systematic evaluation of MRI-based characterization of tumor-associated vascular morphology and hemodynamics via a dynamic digital phantom. J Med Imaging (Bellingham). 2024;11 (2):024002. doi: 10.1117/1.JMI.11.2.024002. PubMed PMID:38463607 PubMed Central PMC10921778.
  12. Zalpuri, I, Guerrero, APS, Castillo, EG, Coverdale, J, Brenner, AM. Advancing Health Equity, Diversity, and Inclusion in Psychiatry Graduate Medical Education. Acad Psychiatry. 2024;48 (2):115-118. doi: 10.1007/s40596-024-01954-2. PubMed PMID:38443655 .
  13. Lorenzo, G, Heiselman, JS, Liss, MA, Miga, MI, Gomez, H, Yankeelov, TE et al.. A Pilot Study on Patient-specific Computational Forecasting of Prostate Cancer Growth during Active Surveillance Using an Imaging-informed Biomechanistic Model. Cancer Res Commun. 2024;4 (3):617-633. doi: 10.1158/2767-9764.CRC-23-0449. PubMed PMID:38426815 PubMed Central PMC10906139.
  14. Miniere, HJM, Lima, EABF, Lorenzo, G, Hormuth, DA 2nd, Ty, S, Brock, A et al.. A mathematical model for predicting the spatiotemporal response of breast cancer cells treated with doxorubicin. Cancer Biol Ther. 2024;25 (1):2321769. doi: 10.1080/15384047.2024.2321769. PubMed PMID:38411436 PubMed Central PMC11057790.
  15. Garcia, MA, Liu, R, Nihart, A, El Hayek, E, Castillo, E, Barrozo, ER et al.. Quantitation and identification of microplastics accumulation in human placental specimens using pyrolysis gas chromatography mass spectrometry. Toxicol Sci. 2024;199 (1):81-88. doi: 10.1093/toxsci/kfae021. PubMed PMID:38366932 PubMed Central PMC11057519.
  16. Laubenbacher, R, Adler, F, An, G, Castiglione, F, Eubank, S, Fonseca, LL et al.. Forum on immune digital twins: a meeting report. NPJ Syst Biol Appl. 2024;10 (1):19. doi: 10.1038/s41540-024-00345-5. PubMed PMID:38365857 PubMed Central PMC10873299.
  17. Huang, K, Chung, C, Ludmir, EB, Zhang, L, Owens, CA, Vega, JG et al.. Automatic end-to-end VMAT treatment planning for rectal cancers. J Appl Clin Med Phys. 2024;25 (4):e14259. doi: 10.1002/acm2.14259. PubMed PMID:38317597 PubMed Central PMC11005975.
  18. Franco-Rocha, OY, Lewis, KA, Kesler, SR, Henneghan, AM. An Exploratory Analysis of Contributors to Cognitive Functioning Among Sexual and Gender Minority Individuals Who Had COVID-19. J Homosex. 2024; :1-16. doi: 10.1080/00918369.2024.2309497. PubMed PMID:38305820 .
  19. Wahid, KA, Fuentes, D. Weak Supervision, Strong Results: Achieving High Performance in Intracranial Hemorrhage Detection with Fewer Annotation Labels. Radiol Artif Intell. 2024;6 (1):e230598. doi: 10.1148/ryai.230598. PubMed PMID:38294326 PubMed Central PMC10831509.
  20. Mukherjee, S, McDonald, AD, Kesler, SR, Cuevas, H, Swank, C, Stevens, A et al.. Driving among individuals with chronic conditions: A systematic review of applied research using kinematic driving sensors. J Am Geriatr Soc. 2024;72 (4):1242-1251. doi: 10.1111/jgs.18738. PubMed PMID:38243756 PubMed Central PMC11018482.
  21. Dulaney, A, Virostko, J. Disparities in the Demographic Composition of The Cancer Imaging Archive. Radiol Imaging Cancer. 2024;6 (1):e230100. doi: 10.1148/rycan.230100. PubMed PMID:38240671 PubMed Central PMC10825717.
  22. Li, W, Partridge, SC, Newitt, DC, Steingrimsson, J, Marques, HS, Bolan, PJ et al.. Breast Multiparametric MRI for Prediction of Neoadjuvant Chemotherapy Response in Breast Cancer: The BMMR2 Challenge. Radiol Imaging Cancer. 2024;6 (1):e230033. doi: 10.1148/rycan.230033. PubMed PMID:38180338 PubMed Central PMC10825718.
  23. Wahid, KA, Sahlsten, J, Jaskari, J, Dohopolski, MJ, Kaski, K, He, R et al.. Harnessing uncertainty in radiotherapy auto-segmentation quality assurance. Phys Imaging Radiat Oncol. 2024;29 :100526. doi: 10.1016/j.phro.2023.100526. PubMed PMID:38179210 PubMed Central PMC10765294.
  24. Yankeelov, TE, Hormuth, DA 2nd, Lima, EABF, Lorenzo, G, Wu, C, Okereke, LC et al.. Designing clinical trials for patients who are not average. iScience. 2024;27 (1):108589. doi: 10.1016/j.isci.2023.108589. PubMed PMID:38169893 PubMed Central PMC10758956.
  25. Virostko, J, Wright, JJ, Williams, JM, Hilmes, MA, Triolo, TM, Broncucia, H et al.. Longitudinal Assessment of Pancreas Volume by MRI Predicts Progression to Stage 3 Type 1 Diabetes. Diabetes Care. 2024;47 (3):393-400. doi: 10.2337/dc23-1681. PubMed PMID:38151474 PubMed Central PMC10909689.
  26. Shalom, ES, Kim, H, van der Heijden, RA, Ahmed, Z, Patel, R, Hormuth, DA 2nd et al.. The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge. Magn Reson Med. 2024;91 (5):1803-1821. doi: 10.1002/mrm.29909. PubMed PMID:38115695 .
  27. Manuweera, T, Wagenknecht, A, Kleckner, AS, Dorsey, SG, Zhu, S, Tivarus, ME et al.. Preliminary evaluation of novel Bodily Attention Task to assess the role of the brain in chemotherapy-induced peripheral neurotoxicity (CIPN). Behav Brain Res. 2024;460 :114803. doi: 10.1016/j.bbr.2023.114803. PubMed PMID:38070689 PubMed Central PMC10860373.
  28. Rubio-Infante, N, Castillo, EC, Alves-Figueiredo, H, Ramos-González, M, Salazar-Ramírez, F, Salas-Treviño, D et al.. Previous cardiovascular injury is a prerequisite for immune checkpoint inhibitor-associated lethal myocarditis in mice. ESC Heart Fail. 2024;11 (2):1249-1257. doi: 10.1002/ehf2.14614. PubMed PMID:38049390 PubMed Central PMC10966245.
  29. Chen, Y, Pahlavian, SH, Jacobs, P, Neupane, T, Forghani-Arani, F, Castillo, E et al.. Systematic Evaluation of the Impact of Lung Segmentation Methods on 4-Dimensional Computed Tomography Ventilation Imaging Using a Large Patient Database. Int J Radiat Oncol Biol Phys. 2024;118 (1):242-252. doi: 10.1016/j.ijrobp.2023.08.017. PubMed PMID:37607642 PubMed Central PMC10842520.
Search PubMed
2023
  1. Christenson, C, Wu, C, Hormuth, DA 2nd, Huang, S, Bao, A, Brenner, A et al.. Predicting the spatio-temporal response of recurrent glioblastoma treated with rhenium-186 labelled nanoliposomes. Brain Multiphys. 2023;5 :. doi: 10.1016/j.brain.2023.100084. PubMed PMID:38187909 PubMed Central PMC10768931.
  2. Wahid, KA, Sahlsten, J, Jaskari, J, Dohopolski, MJ, Kaski, K, He, R et al.. Harnessing uncertainty in radiotherapy auto-segmentation quality assurance. Phys Imaging Radiat Oncol. 2024;29 :100526. doi: 10.1016/j.phro.2023.100526. PubMed PMID:38179210 PubMed Central PMC10765294.
  3. Yankeelov, TE, Hormuth, DA 2nd, Lima, EABF, Lorenzo, G, Wu, C, Okereke, LC et al.. Designing clinical trials for patients who are not average. iScience. 2024;27 (1):108589. doi: 10.1016/j.isci.2023.108589. PubMed PMID:38169893 PubMed Central PMC10758956.
  4. Shalom, ES, Kim, H, van der Heijden, RA, Ahmed, Z, Patel, R, Hormuth, DA 2nd et al.. The ISMRM Open Science Initiative for Perfusion Imaging (OSIPI): Results from the OSIPI-Dynamic Contrast-Enhanced challenge. Magn Reson Med. 2024;91 (5):1803-1821. doi: 10.1002/mrm.29909. PubMed PMID:38115695 .
  5. Lord, SM, Bahnson, HT, Greenbaum, CJ, Liljenquist, DR, Virostko, J, Speake, C et al.. Testing a new platform to screen disease-modifying therapy in type 1 diabetes. PLoS One. 2023;18 (12):e0293268. doi: 10.1371/journal.pone.0293268. PubMed PMID:38096190 PubMed Central PMC10721089.
  6. Kesler, SR, Harrison, RA, Schultz, AT, Michener, H, Bean, P, Vallone, V et al.. Strength of spatial correlation between structural brain network connectivity and brain-wide patterns of proto-oncogene and neural network construction gene expression is associated with diffuse glioma survival. medRxiv. 2023; :. doi: 10.1101/2023.11.27.23299085. PubMed PMID:38076940 PubMed Central PMC10705651.
  7. Özkan, A, Stolley, DL, Cressman, ENK, McMillin, M, Yankeelov, TE, Rylander, MN et al.. Vascularized Hepatocellular Carcinoma on a Chip to Control Chemoresistance through Cirrhosis, Inflammation and Metabolic Activity. Small Struct. 2023;4 (9):. doi: 10.1002/sstr.202200403. PubMed PMID:38073766 PubMed Central PMC10707486.
  8. Manuweera, T, Wagenknecht, A, Kleckner, AS, Dorsey, SG, Zhu, S, Tivarus, ME et al.. Preliminary evaluation of novel Bodily Attention Task to assess the role of the brain in chemotherapy-induced peripheral neurotoxicity (CIPN). Behav Brain Res. 2024;460 :114803. doi: 10.1016/j.bbr.2023.114803. PubMed PMID:38070689 PubMed Central PMC10860373.
  9. Wagner, A, Schlicke, P, Fritz, M, Kuttler, C, Oden, JT, Schumann, C et al.. A phase-field model for non-small cell lung cancer under the effects of immunotherapy. Math Biosci Eng. 2023;20 (10):18670-18694. doi: 10.3934/mbe.2023828. PubMed PMID:38052574 .
  10. Lima, EABF, Song, PN, Reeves, K, Larimer, B, Sorace, AG, Yankeelov, TE et al.. Predicting response to combination evofosfamide and immunotherapy under hypoxic conditions in murine models of colon cancer. Math Biosci Eng. 2023;20 (10):17625-17645. doi: 10.3934/mbe.2023783. PubMed PMID:38052529 PubMed Central PMC10703000.
  11. Rubio-Infante, N, Castillo, EC, Alves-Figueiredo, H, Ramos-González, M, Salazar-Ramírez, F, Salas-Treviño, D et al.. Previous cardiovascular injury is a prerequisite for immune checkpoint inhibitor-associated lethal myocarditis in mice. ESC Heart Fail. 2024;11 (2):1249-1257. doi: 10.1002/ehf2.14614. PubMed PMID:38049390 PubMed Central PMC10966245.
  12. Jarrett, AM, Song, PN, Reeves, K, Lima, EABF, Larimer, B, Yankeelov, TE et al.. Investigating tumor-host response dynamics in preclinical immunotherapy experiments using a stepwise mathematical modeling strategy. Math Biosci. 2023;366 :109106. doi: 10.1016/j.mbs.2023.109106. PubMed PMID:37931781 PubMed Central PMC10841996.
  13. Wahid, KA, Cardenas, CE, Marquez, B, Netherton, TJ, Kann, BH, Court, LE et al.. Evolving Horizons in Radiotherapy Auto-Contouring: Distilling Insights, Embracing Data-Centric Frameworks, and Moving Beyond Geometric Quantification. ArXiv. 2023; :. . PubMed PMID:37904737 PubMed Central PMC10614971.
  14. Chaudhuri, A, Pash, G, Hormuth, DA 2nd, Lorenzo, G, Kapteyn, M, Wu, C et al.. Predictive digital twin for optimizing patient-specific radiotherapy regimens under uncertainty in high-grade gliomas. Front Artif Intell. 2023;6 :1222612. doi: 10.3389/frai.2023.1222612. PubMed PMID:37886348 PubMed Central PMC10598726.
  15. Jha, PK, Walker, C, Mitchell, D, Oden, JT, Schellingerhout, D, Bankson, JA et al.. Mutual-information based optimal experimental design for hyperpolarized [Formula: see text]C-pyruvate MRI. Sci Rep. 2023;13 (1):18047. doi: 10.1038/s41598-023-44958-y. PubMed PMID:37872226 PubMed Central PMC10593962.
  16. Gadde, M, Mehrabi-Dehdezi, M, Debeb, BG, Woodward, WA, Rylander, MN. Influence of Macrophages on Vascular Invasion of Inflammatory Breast Cancer Emboli Measured Using an In Vitro Microfluidic Multi-Cellular Platform. Cancers (Basel). 2023;15 (19):. doi: 10.3390/cancers15194883. PubMed PMID:37835577 PubMed Central PMC10571588.
  17. Hernandez, S, Burger, H, Nguyen, C, Paulino, AC, Lucas, JT, Faught, AM et al.. Validation of an automated contouring and treatment planning tool for pediatric craniospinal radiation therapy. Front Oncol. 2023;13 :1221792. doi: 10.3389/fonc.2023.1221792. PubMed PMID:37810961 PubMed Central PMC10556471.
  18. Kesler, SR, Henneghan, AM, Prinsloo, S, Palesh, O, Wintermark, M. Neuroimaging based biotypes for precision diagnosis and prognosis in cancer-related cognitive impairment. Front Med (Lausanne). 2023;10 :1199605. doi: 10.3389/fmed.2023.1199605. PubMed PMID:37720513 PubMed Central PMC10499624.
  19. Gronberg, MP, Jhingran, A, Netherton, TJ, Gay, SS, Cardenas, CE, Chung, C et al.. Deep learning-based dose prediction to improve the plan quality of volumetric modulated arc therapy for gynecologic cancers. Med Phys. 2023;50 (11):6639-6648. doi: 10.1002/mp.16735. PubMed PMID:37706560 PubMed Central PMC10947338.
  20. Wahid, KA, Sahin, O, Kundu, S, Lin, D, Alanis, A, Tehami, S et al.. Determining The Role Of Radiation Oncologist Demographic Factors On Segmentation Quality: Insights From A Crowd-Sourced Challenge Using Bayesian Estimation. medRxiv. 2023; :. doi: 10.1101/2023.08.30.23294786. PubMed PMID:37693394 PubMed Central PMC10491357.
  21. Lorenzo, G, Ahmed, SR, Ii, DAH, Vaughn, B, Kalpathy-Cramer, J, Solorio, L et al.. Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data. ArXiv. 2023; :. . PubMed PMID:37693182 PubMed Central PMC10491321.
  22. Giolando, P, Kakaletsis, S, Zhang, X, Weickenmeier, J, Castillo, E, Dortdivanlioglu, B et al.. AI-dente: an open machine learning based tool to interpret nano-indentation data of soft tissues and materials. Soft Matter. 2023;19 (35):6710-6720. doi: 10.1039/d3sm00402c. PubMed PMID:37622379 PubMed Central PMC10499084.
  23. Chen, Y, Pahlavian, SH, Jacobs, P, Neupane, T, Forghani-Arani, F, Castillo, E et al.. Systematic Evaluation of the Impact of Lung Segmentation Methods on 4-Dimensional Computed Tomography Ventilation Imaging Using a Large Patient Database. Int J Radiat Oncol Biol Phys. 2024;118 (1):242-252. doi: 10.1016/j.ijrobp.2023.08.017. PubMed PMID:37607642 PubMed Central PMC10842520.
  24. Ghassemi, N, Castillo, R, Castillo, E, Jones, BL, Miften, M, Kavanagh, B et al.. Evaluation of variables predicting PFT changes for lung cancer patients treated on a prospective 4DCT-ventilation functional avoidance clinical trial. Radiother Oncol. 2023;187 :109821. doi: 10.1016/j.radonc.2023.109821. PubMed PMID:37516361 PubMed Central PMC10529225.
  25. Martinez, F, Castillo, E, Griffin, G, Chapman, S, Dey, M, Tholpady, A et al.. Technical Note: Use of a Novel Bacterial Culture Sampling Device for Pooled Whole Blood Platelets. Ann Clin Lab Sci. 2023;53 (3):485-488. . PubMed PMID:37437944 .
  26. Franco-Rocha, OY, Lewis, KA, Longoria, KD, De La Torre Schutz, A, Wright, ML, Kesler, SR et al.. Cancer-related cognitive impairment in racial and ethnic minority groups: a scoping review. J Cancer Res Clin Oncol. 2023;149 (13):12561-12587. doi: 10.1007/s00432-023-05088-0. PubMed PMID:37432455 .
  27. Thompson, EA, Jacobsen, MC, Fuentes, DT, Layman, RR, Cressman, ENK. Quantitative dual-energy computed tomography with cesium as a novel contrast agent for localization of thermochemical ablation in phantoms and ex vivo models. Med Phys. 2023;50 (12):7879-7890. doi: 10.1002/mp.16558. PubMed PMID:37409792 PubMed Central PMC10770302.
  28. Yang, J, Virostko, J, Liu, J, Jarrett, AM, Hormuth, DA 2nd, Yankeelov, TE et al.. Comparing mechanism-based and machine learning models for predicting the effects of glucose accessibility on tumor cell proliferation. Sci Rep. 2023;13 (1):10387. doi: 10.1038/s41598-023-37238-2. PubMed PMID:37369672 PubMed Central PMC10300192.
  29. Davarci, OO, Yang, EY, Viguerie, A, Yankeelov, TE, Lorenzo, G. Dynamic parameterization of a modified SEIRD model to analyze and forecast the dynamics of COVID-19 outbreaks in the United States. Eng Comput. 2023; :1-25. doi: 10.1007/s00366-023-01816-9. PubMed PMID:37362241 PubMed Central PMC10129322.
  30. Duswald, T, Lima, EABF, Oden, JT, Wohlmuth, B. Bridging Scales: a Hybrid Model to Simulate Vascular Tumor Growth and Treatment Response. ArXiv. 2023; :. . PubMed PMID:37332572 PubMed Central PMC10274951.
  31. Franco-Rocha, OY, Wheldon, CW, Trainum, K, Kesler, SR, Henneghan, AM. Clinical, psychosocial, and sociodemographic factors of sexual and gender minority groups with cancer: A systematic review. Eur J Oncol Nurs. 2023;64 :102343. doi: 10.1016/j.ejon.2023.102343. PubMed PMID:37290162 .
  32. Moore, SM, Quirk, JD, Lassiter, AW, Laforest, R, Ayers, GD, Badea, CT et al.. Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging. Tomography. 2023;9 (3):995-1009. doi: 10.3390/tomography9030081. PubMed PMID:37218941 PubMed Central PMC10204428.
  33. Slavkova, KP, Patel, SH, Cacini, Z, Kazerouni, AS, Gardner, AL, Yankeelov, TE et al.. Author Correction: Mathematical modelling of the dynamics of image-informed tumor habitats in a murine model of glioma. Sci Rep. 2023;13 (1):8279. doi: 10.1038/s41598-023-35324-z. PubMed PMID:37217513 PubMed Central PMC10203110.
  34. Mulholland, MM, Prinsloo, S, Kvale, E, Dula, AN, Palesh, O, Kesler, SR et al.. Behavioral and biologic characteristics of cancer-related cognitive impairment biotypes. Brain Imaging Behav. 2023;17 (3):320-328. doi: 10.1007/s11682-023-00774-6. PubMed PMID:37127832 PubMed Central PMC10195718.
  35. Howland, KK, Brock, A. Cellular barcoding tracks heterogeneous clones through selective pressures and phenotypic transitions. Trends Cancer. 2023;9 (7):591-601. doi: 10.1016/j.trecan.2023.03.008. PubMed PMID:37105856 PubMed Central PMC10339273.
  36. Alkim, E, Dowst, H, DiCarlo, J, Dobrolecki, LE, Hernández-Herrera, A, Hormuth, DA 2nd et al.. Toward Practical Integration of Omic and Imaging Data in Co-Clinical Trials. Tomography. 2023;9 (2):810-828. doi: 10.3390/tomography9020066. PubMed PMID:37104137 PubMed Central PMC10144684.
  37. Gammon, ST, Cohen, AS, Lehnert, AL, Sullivan, DC, Malyarenko, D, Manning, HC et al.. An Online Repository for Pre-Clinical Imaging Protocols (PIPs). Tomography. 2023;9 (2):750-758. doi: 10.3390/tomography9020060. PubMed PMID:37104131 PubMed Central PMC10145184.
  38. Adler, FR, Anderson, ARA, Bhushan, A, Bogdan, P, Bravo-Cordero, JJ, Brock, A et al.. Modeling collective cell behavior in cancer: Perspectives from an interdisciplinary conversation. Cell Syst. 2023;14 (4):252-257. doi: 10.1016/j.cels.2023.03.002. PubMed PMID:37080161 PubMed Central PMC10760508.
  39. Liang, B, Tan, J, Lozenski, L, Hormuth, DA, Yankeelov, TE, Villa, U et al.. Bayesian Inference of Tissue Heterogeneity for Individualized Prediction of Glioma Growth. IEEE Trans Med Imaging. 2023;42 (10):2865-2875. doi: 10.1109/TMI.2023.3267349. PubMed PMID:37058375 PubMed Central PMC10599765.
  40. Franco-Rocha, OY, Wheldon, CW, Osier, N, Lett, E, Kesler, SR, Henneghan, AM et al.. Cisheteronormativity and its influence on the psychosocial experience of LGBTQ+ people with cancer: A qualitative systematic review. Psychooncology. 2023;32 (6):834-845. doi: 10.1002/pon.6133. PubMed PMID:37025048 .
  41. Wright, JJ, Dulaney, A, Williams, JM, Hilmes, MA, Du, L, Kang, H et al.. Longitudinal MRI Shows Progressive Decline in Pancreas Size and Altered Pancreas Shape in Type 1 Diabetes. J Clin Endocrinol Metab. 2023;108 (10):2699-2707. doi: 10.1210/clinem/dgad150. PubMed PMID:36938587 PubMed Central PMC10505530.
  42. Hernandez, S, Nguyen, C, Gay, S, Duryea, J, Howell, R, Fuentes, D et al.. Resection cavity auto-contouring for patients with pediatric medulloblastoma using only CT information. J Appl Clin Med Phys. 2023;24 (7):e13956. doi: 10.1002/acm2.13956. PubMed PMID:36917640 PubMed Central PMC10338760.
  43. Brocklehurst, S, Ghousifam, N, Zuniga, K, Stolley, D, Rylander, MN. Multilayer In Vitro Human Skin Tissue Platforms for Quantitative Burn Injury Investigation. Bioengineering (Basel). 2023;10 (2):. doi: 10.3390/bioengineering10020265. PubMed PMID:36829759 PubMed Central PMC9952576.
  44. Slavkova, KP, Patel, SH, Cacini, Z, Kazerouni, AS, Gardner, AL, Yankeelov, TE et al.. Mathematical modelling of the dynamics of image-informed tumor habitats in a murine model of glioma. Sci Rep. 2023;13 (1):2916. doi: 10.1038/s41598-023-30010-6. PubMed PMID:36804605 PubMed Central PMC9941120.
  45. Burkey, AA, Ghousifam, N, Hillsley, AV, Brotherton, ZW, Rezaeeyazdi, M, Hatridge, TA et al.. Synthesis of Poly(allyl glycidyl ether)-Derived Polyampholytes and Their Application to the Cryopreservation of Living Cells. Biomacromolecules. 2023;24 (3):1475-1482. doi: 10.1021/acs.biomac.2c01488. PubMed PMID:36780271 .
  46. Wright, JJ, Williams, JM, Letourneau-Freiberg, LR, Kandasamy, B, Reyes, D, Kanegusuku, AG et al.. Insulin Deficiency From Insulin Gene Mutation Leads to Smaller Pancreas. Diabetes Care. 2023;46 (4):773-776. doi: 10.2337/dc22-2082. PubMed PMID:36724370 PubMed Central PMC10090891.
  47. Gronberg, MP, Beadle, BM, Garden, AS, Skinner, H, Gay, S, Netherton, T et al.. Deep Learning-Based Dose Prediction for Automated, Individualized Quality Assurance of Head and Neck Radiation Therapy Plans. Pract Radiat Oncol. 2023;13 (3):e282-e291. doi: 10.1016/j.prro.2022.12.003. PubMed PMID:36697347 .
  48. Moawad, AW, Morshid, A, Khalaf, AM, Elmohr, MM, Hazle, JD, Fuentes, D et al.. Multimodality annotated hepatocellular carcinoma data set including pre- and post-TACE with imaging segmentation. Sci Data. 2023;10 (1):33. doi: 10.1038/s41597-023-01928-3. PubMed PMID:36653372 PubMed Central PMC9849450.
  49. Phillips, CM, Lima, EABF, Gadde, M, Jarrett, AM, Rylander, MN, Yankeelov, TE et al.. Towards integration of time-resolved confocal microscopy of a 3D in vitro microfluidic platform with a hybrid multiscale model of tumor angiogenesis. PLoS Comput Biol. 2023;19 (1):e1009499. doi: 10.1371/journal.pcbi.1009499. PubMed PMID:36652468 PubMed Central PMC9886306.
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2019
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Search PubMed
2018
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  35. Woodall, RT, Barnes, SL, Hormuth, DA 2nd, Sorace, AG, Quarles, CC, Yankeelov, TE et al.. The effects of intravoxel contrast agent diffusion on the analysis of DCE-MRI data in realistic tissue domains. Magn Reson Med. 2018;80 (1):330-340. doi: 10.1002/mrm.26995. PubMed PMID:29115690 PubMed Central PMC5876107.
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Search PubMed
2017
  1. Hormuth, DA 2nd, Weis, JA, Barnes, SL, Miga, MI, Quaranta, V, Yankeelov, TE et al.. Biophysical Modeling of In Vivo Glioma Response After Whole-Brain Radiation Therapy in a Murine Model of Brain Cancer. Int J Radiat Oncol Biol Phys. 2018;100 (5):1270-1279. doi: 10.1016/j.ijrobp.2017.12.004. PubMed PMID:29398129 PubMed Central PMC5934308.
  2. Rocha, HL, Almeida, RC, Lima, EABF, Resende, ACM, Oden, JT, Yankeelov, TE et al.. A HYBRID THREE-SCALE MODEL OF TUMOR GROWTH. Math Models Methods Appl Sci. 2018;28 (1):61-93. doi: 10.1142/S0218202518500021. PubMed PMID:29353950 PubMed Central PMC5773147.
  3. Kang, H, Hainline, A, Arlinghaus, LR, Elderidge, S, Li, X, Abramson, VG et al.. Combining multiparametric MRI with receptor information to optimize prediction of pathologic response to neoadjuvant therapy in breast cancer: preliminary results. J Med Imaging (Bellingham). 2018;5 (1):011015. doi: 10.1117/1.JMI.5.1.011015. PubMed PMID:29322067 PubMed Central PMC5747275.
  4. Lima, EABF, Oden, JT, Wohlmuth, B, Shahmoradi, A, Hormuth, DA 2nd, Yankeelov, TE et al.. Selection and Validation of Predictive Models of Radiation Effects on Tumor Growth Based on Noninvasive Imaging Data. Comput Methods Appl Mech Eng. 2017;327 :277-305. doi: 10.1016/j.cma.2017.08.009. PubMed PMID:29269963 PubMed Central PMC5734134.
  5. Mang, A, Biros, G. A SEMI-LAGRANGIAN TWO-LEVEL PRECONDITIONED NEWTON-KRYLOV SOLVER FOR CONSTRAINED DIFFEOMORPHIC IMAGE REGISTRATION. SIAM J Sci Comput. 2017;39 (6):B1064-B1101. doi: 10.1137/16M1070475. PubMed PMID:29255342 PubMed Central PMC5731678.
  6. Beechar, VB, Prabhu, SS, Bastos, D, Weinberg, JS, Stafford, RJ, Fuentes, D et al.. Volumetric response of progressing post-SRS lesions treated with laser interstitial thermal therapy. J Neurooncol. 2018;137 (1):57-65. doi: 10.1007/s11060-017-2694-3. PubMed PMID:29204838 PubMed Central PMC5823725.
  7. Virostko, J, Hainline, A, Kang, H, Arlinghaus, LR, Abramson, RG, Barnes, SL et al.. Dynamic contrast-enhanced magnetic resonance imaging and diffusion-weighted magnetic resonance imaging for predicting the response of locally advanced breast cancer to neoadjuvant therapy: a meta-analysis. J Med Imaging (Bellingham). 2018;5 (1):011011. doi: 10.1117/1.JMI.5.1.011011. PubMed PMID:29201942 PubMed Central PMC5701084.
  8. Brock, A, Huang, S. Precision Oncology: Between Vaguely Right and Precisely Wrong. Cancer Res. 2017;77 (23):6473-6479. doi: 10.1158/0008-5472.CAN-17-0448. PubMed PMID:29162615 .
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  10. Malyarenko, D, Fedorov, A, Bell, L, Prah, M, Hectors, S, Arlinghaus, L et al.. Toward uniform implementation of parametric map Digital Imaging and Communication in Medicine standard in multisite quantitative diffusion imaging studies. J Med Imaging (Bellingham). 2018;5 (1):011006. doi: 10.1117/1.JMI.5.1.011006. PubMed PMID:29134189 PubMed Central PMC5658654.
  11. Woodall, RT, Barnes, SL, Hormuth, DA 2nd, Sorace, AG, Quarles, CC, Yankeelov, TE et al.. The effects of intravoxel contrast agent diffusion on the analysis of DCE-MRI data in realistic tissue domains. Magn Reson Med. 2018;80 (1):330-340. doi: 10.1002/mrm.26995. PubMed PMID:29115690 PubMed Central PMC5876107.
  12. Newitt, DC, Malyarenko, D, Chenevert, TL, Quarles, CC, Bell, L, Fedorov, A et al.. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018;5 (1):011003. doi: 10.1117/1.JMI.5.1.011003. PubMed PMID:29021993 PubMed Central PMC5633866.
  13. Cardin, DB, Goff, LW, Chan, E, Whisenant, JG, Dan Ayers, G, Takebe, N et al.. Dual Src and EGFR inhibition in combination with gemcitabine in advanced pancreatic cancer: phase I results : A phase I clinical trial. Invest New Drugs. 2018;36 (3):442-450. doi: 10.1007/s10637-017-0519-z. PubMed PMID:28990119 PubMed Central PMC5891394.
  14. Hu, Z, Li, Y, Van Nieuwenhuijze, A, Selden, HJ, Jarrett, AM, Sorace, AG et al.. CCR7 Modulates the Generation of Thymic Regulatory T Cells by Altering the Composition of the Thymic Dendritic Cell Compartment. Cell Rep. 2017;21 (1):168-180. doi: 10.1016/j.celrep.2017.09.016. PubMed PMID:28978470 PubMed Central PMC5639943.
  15. Wang, D, Arlinghaus, LR, Yankeelov, TE, Yang, X, Smith, DS. Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast. Int J Biomed Imaging. 2017;2017 :7835749. doi: 10.1155/2017/7835749. PubMed PMID:28932236 PubMed Central PMC5592397.
  16. Sorace, AG, Harvey, S, Syed, A, Yankeelov, TE. Imaging Considerations and Interprofessional Opportunities in the Care of Breast Cancer Patients in the Neoadjuvant Setting. Semin Oncol Nurs. 2017;33 (4):425-439. doi: 10.1016/j.soncn.2017.08.008. PubMed PMID:28927763 PubMed Central PMC5667646.
  17. Barnes, SL, Sorace, AG, Whisenant, JG, McIntyre, JO, Kang, H, Yankeelov, TE et al.. DCE- and DW-MRI as early imaging biomarkers of treatment response in a preclinical model of triple negative breast cancer. NMR Biomed. 2017;30 (11):. doi: 10.1002/nbm.3799. PubMed PMID:28915312 .
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2016
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  2. Kurland, BF, Aggarwal, S, Yankeelov, TE, Gerstner, ER, Mountz, JM, Linden, HM et al.. Accrual Patterns for Clinical Studies Involving Quantitative Imaging: Results of an NCI Quantitative Imaging Network (QIN) Survey. Tomography. 2016;2 (4):276-282. doi: 10.18383/j.tom.2016.00169. PubMed PMID:28127586 PubMed Central PMC5260812.
  3. Malyarenko, DI, Wilmes, LJ, Arlinghaus, LR, Jacobs, MA, Huang, W, Helmer, KG et al.. QIN DAWG Validation of Gradient Nonlinearity Bias Correction Workflow for Quantitative Diffusion-Weighted Imaging in Multicenter Trials. Tomography. 2016;2 (4):396-405. doi: 10.18383/j.tom.2016.00214. PubMed PMID:28105469 PubMed Central PMC5241082.
  4. Arlinghaus, LR, Dortch, RD, Whisenant, JG, Kang, H, Abramson, RG, Yankeelov, TE et al.. Quantitative Magnetization Transfer Imaging of the Breast at 3.0 T: Reproducibility in Healthy Volunteers. Tomography. 2016;2 (4):260-266. doi: 10.18383/j.tom.2016.00142. PubMed PMID:28090588 PubMed Central PMC5228602.
  5. Whisenant, JG, Dortch, RD, Grissom, W, Kang, H, Arlinghaus, LR, Yankeelov, TE et al.. Bloch-Siegert B1-Mapping Improves Accuracy and Precision of Longitudinal Relaxation Measurements in the Breast at 3 T. Tomography. 2016;2 (4):250-259. doi: 10.18383/j.tom.2016.00133. PubMed PMID:28044146 PubMed Central PMC5201175.
  6. Weis, JA, Miga, MI, Yankeelov, TE. Three-dimensional Image-based Mechanical Modeling for Predicting the Response of Breast Cancer to Neoadjuvant Therapy. Comput Methods Appl Mech Eng. 2017;314 :494-512. doi: 10.1016/j.cma.2016.08.024. PubMed PMID:28042181 PubMed Central PMC5193147.
  7. Madankan, R, Stefan, W, Fahrenholtz, SJ, MacLellan, CJ, Hazle, JD, Stafford, RJ et al.. Accelerated magnetic resonance thermometry in the presence of uncertainties. Phys Med Biol. 2017;62 (1):214-245. doi: 10.1088/1361-6560/62/1/214. PubMed PMID:27991449 .
  8. Williams, JM, Arlinghaus, LR, Rani, SD, Shone, MD, Abramson, VG, Pendyala, P et al.. Towards real-time topical detection and characterization of FDG dose infiltration prior to PET imaging. Eur J Nucl Med Mol Imaging. 2016;43 (13):2374-2380. doi: 10.1007/s00259-016-3477-3. PubMed PMID:27557845 PubMed Central PMC5096989.
  9. O'Connor, JP, Aboagye, EO, Adams, JE, Aerts, HJ, Barrington, SF, Beer, AJ et al.. Imaging biomarker roadmap for cancer studies. Nat Rev Clin Oncol. 2017;14 (3):169-186. doi: 10.1038/nrclinonc.2016.162. PubMed PMID:27725679 PubMed Central PMC5378302.
  10. Sharifi, F, Sooriyarachchi, AC, Altural, H, Montazami, R, Rylander, MN, Hashemi, N et al.. Fiber Based Approaches as Medicine Delivery Systems. ACS Biomater Sci Eng. 2016;2 (9):1411-1431. doi: 10.1021/acsbiomaterials.6b00281. PubMed PMID:33440580 .
  11. Ma, C, Sastry, KS, Flore, M, Gehani, S, Al-Bozom, I, Feng, Y et al.. CrossLink: a novel method for cross-condition classification of cancer subtypes. BMC Genomics. 2016;17 Suppl 7 (Suppl 7):549. doi: 10.1186/s12864-016-2903-z. PubMed PMID:27556419 PubMed Central PMC5001207.
  12. Yankeelov, TE, Miga, MI. Introduction to the Special Section on Clinical Applications of Multi-Scale Modeling. Ann Biomed Eng. 2016;44 (9):2589-90. doi: 10.1007/s10439-016-1702-7. PubMed PMID:27491887 PubMed Central PMC4984394.
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